Classification within Repbase starts with the TE classes proposed by Finnegan (1989), based upon the type of nucleic acid (RNA or DNA) used as a transposition intermediate. Further classification is based on coding regions, structural features and sequence similarity. Non-TE repeats also occupy several categories in this schema.
*The Gypsy name is currently under reconsideration by the community, learn more here*
| URL | http://www.girinst.org/repbase/ |
|---|---|
| DOI | https://doi.org/10.1159/000084979 |
| Type | Classification Schema |
| Root | Type | Class | Unranked | Superfamily/Clade | Group | Additional References |
|---|---|---|---|---|---|---|
| Transposable Element | ||||||
| Transposable Element | Retrotransposon | |||||
| Transposable Element | Retrotransposon | Non-LTR | ||||
| Transposable Element | Retrotransposon | Non-LTR | Ambal | Ambal | ||
| Transposable Element | Retrotransposon | Non-LTR | CRE | CRE | ||
| Transposable Element | Retrotransposon | Non-LTR | CRE | Genie | ||
| Transposable Element | Retrotransposon | Non-LTR | CR1 | CR1 | ||
| Transposable Element | Retrotransposon | Non-LTR | CR1 | Crack | ||
| Transposable Element | Retrotransposon | Non-LTR | CR1 | Daphne | ||
| Transposable Element | Retrotransposon | Non-LTR | CR1 | Kiri | ||
| Transposable Element | Retrotransposon | Non-LTR | CR1 | L2 | ||
| Transposable Element | Retrotransposon | Non-LTR | CR1 | L2A | ||
| Transposable Element | Retrotransposon | Non-LTR | CR1 | L2B | ||
| Transposable Element | Retrotransposon | Non-LTR | CR1 | Rex1 | ||
| Transposable Element | Retrotransposon | Non-LTR | Dualen/RandI | RandI | ||
| Transposable Element | Retrotransposon | Non-LTR | I | I | ||
| Transposable Element | Retrotransposon | Non-LTR | I | Ingi | ||
| Transposable Element | Retrotransposon | Non-LTR | I | Jockey | ||
| Transposable Element | Retrotransposon | Non-LTR | I | Loa | ||
| Transposable Element | Retrotransposon | Non-LTR | I | Loner | ||
| Transposable Element | Retrotransposon | Non-LTR | I | Nimb | ||
| Transposable Element | Retrotransposon | Non-LTR | I | Outcast | ||
| Transposable Element | Retrotransposon | Non-LTR | I | R1 | ||
| Transposable Element | Retrotransposon | Non-LTR | I | Tad1 | ||
| Transposable Element | Retrotransposon | Non-LTR | I | Vingi | ||
| Transposable Element | Retrotransposon | Non-LTR | L1 | L1 | ||
| Transposable Element | Retrotransposon | Non-LTR | L1 | Proto1 | ||
| Transposable Element | Retrotransposon | Non-LTR | L1 | Tx1 | ||
| Transposable Element | Retrotransposon | Non-LTR | R2 | Hero | ||
| Transposable Element | Retrotransposon | Non-LTR | R2 | NeSL | ||
| Transposable Element | Retrotransposon | Non-LTR | R2 | R2 | ||
| Transposable Element | Retrotransposon | Non-LTR | R2 | R4 | ||
| Transposable Element | Retrotransposon | Non-LTR | RTE | ORTE | ||
| Transposable Element | Retrotransposon | Non-LTR | RTE | Proto2 | ||
| Transposable Element | Retrotransposon | Non-LTR | RTE | RTE | ||
| Transposable Element | Retrotransposon | Non-LTR | RTE | RTETP | ||
| Transposable Element | Retrotransposon | Non-LTR | RTE | RTEX | ||
| Transposable Element | Retrotransposon | Non-LTR | Inkcap | |||
| Transposable Element | Retrotransposon | Non-LTR | Deceiver | |||
| Transposable Element | Retrotransposon | Non-LTR | REP | |||
| Transposable Element | Retrotransposon | Non-LTR | Odin | |||
| Transposable Element | Retrotransposon | Non-LTR | Penelope | |||
| Transposable Element | Retrotransposon | Non-LTR | SINE | |||
| Transposable Element | Retrotransposon | Non-LTR | SINE | SINE1/7SL | ||
| Transposable Element | Retrotransposon | Non-LTR | SINE | SINE2/tRNA | ||
| Transposable Element | Retrotransposon | Non-LTR | SINE | SINE3/5S | ||
| Transposable Element | Retrotransposon | Non-LTR | SINE | SINE4 | ||
| Transposable Element | Retrotransposon | Non-LTR | SINE | SINEU/snRNA | ||
| Transposable Element | Retrotransposon | LTR | ||||
| Transposable Element | Retrotransposon | LTR | Gypsy | |||
| Transposable Element | Retrotransposon | LTR | Copia | |||
| Transposable Element | Retrotransposon | LTR | BEL | |||
| Transposable Element | Retrotransposon | LTR | ERV1 | |||
| Transposable Element | Retrotransposon | LTR | ERV2 | |||
| Transposable Element | Retrotransposon | LTR | ERV3 | |||
| Transposable Element | Retrotransposon | LTR | ERV4 | |||
| Transposable Element | Retrotransposon | LTR | Lentivirus | |||
| Transposable Element | Retrotransposon | LTR | DIRS | |||
| Transposable Element | DNA Transposon | |||||
| Transposable Element | DNA Transposon | Cut-and-Paste | ||||
| Transposable Element | DNA Transposon | Cut-and-Paste | Mariner/Tc1 | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | hAT | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | MUDR | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | EnSpm/CACTA | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | piggyBac | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | P | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | Merlin | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | Harbinger | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | Transib | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | Novosib | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | Kolobok | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | ISL2EU | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | IS481EU | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | Zator | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | Ginger1 | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | Ginger2/TDD | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | Academ | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | IS3EU | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | Sola | |||
| Transposable Element | DNA Transposon | Cut-and-Paste | Sola | Sola1 | ||
| Transposable Element | DNA Transposon | Cut-and-Paste | Sola | Sola2 | ||
| Transposable Element | DNA Transposon | Cut-and-Paste | Sola | Sola3 | ||
| Transposable Element | DNA Transposon | Cut-and-Paste | Dada | |||
| Transposable Element | DNA Transposon | Rolling-Circle | Helitron | |||
| Transposable Element | DNA Transposon | Self-Synthesizing | Polinton | |||
| Transposable Element | DNA Transposon | Crypton | ||||
| Transposable Element | DNA Transposon | Crypton | CryptonA | |||
| Transposable Element | DNA Transposon | Crypton | CryptonF | |||
| Transposable Element | DNA Transposon | Crypton | CryptonI | |||
| Transposable Element | DNA Transposon | Crypton | CryptonS | |||
| Transposable Element | DNA Transposon | Crypton | CryptonV | |||
| Transposable Element | DNA Transposon | Zisupton | ||||
| Simple Repeat | Satellite | |||||
| Simple Repeat | Satellite | SAT | ||||
| Simple Repeat | Satellite | MSAT | ||||
| Multicopy Gene | rRNA | |||||
| Multicopy Gene | tRNA | |||||
| Multicopy Gene | snRNA | |||||
| Integrated Virus | DNA Virus | |||||
| Integrated Virus | Caulimoviridae |