This table lists major phylogenetic subdivisions for eukaryotic transposable elements below that of the superfamily level. Subdivisions below the TE superfamily level have been proposed and named based on phylogenetic groupings since the mid 1990s. This list also includes several more recently proposed superfamilies that have not been incorporated into existing classification schemes.
It is the hope that by compiling these, researchers may consider them when describing TEs in new genomes, or new TEs. Also, some of these named groups are surely synonymous, while others may partially overlap each other in terms of assigned members. I hope this spurs researchers to investigate these synonymies and overlaps in the hope of creating an updated hierarchy with which to classify TEs below superfamilies. Ideally, well supported subdivisions should be used as labels for elements in reference libraries.
Although the divisions aren't named, the following paper has details on the major lineages found within many DNA transposon superfamilies based upon an extensive series of phylogenies.
This list is maintained by Tyler A. Elliott and a more frequently updated version of this list may be found here. Suggestions, updates and error corrections can be directed to Tyler, or by commenting on this page.
*The Gypsy name is currently under reconsideration by the community, learn more here*
| Superfamily/Clade | Subdivision 1 | Subdivision 2 | Subdivision 3 | Subdivision 4 | Additional References |
|---|---|---|---|---|---|
| Tc1/Mariner | Tec | 1 | |||
| Tc1/Mariner | DD37E(L31) | 1 | |||
| Tc1/Mariner | HvSm | ||||
| Tc1/Mariner | TBE | 1 | |||
| Tc1/Mariner | Tc3 | 1 | |||
| Tc1/Mariner | Tc1 | 1 | |||
| Tc1/Mariner | Tc1 | TRT | |||
| Tc1/Mariner | Tc1 | Tc1_Hhampei | |||
| Tc1/Mariner | Tc1 | DD37E(L18) | 1 | ||
| Tc1/Mariner | Tc1 | Minos | 1 | ||
| Tc1/Mariner | Tc1 | Impala | 1 | ||
| Tc1/Mariner | Tc1 | rosa | 1 | ||
| Tc1/Mariner | Tc1 | rosa | LTIR | ||
| Tc1/Mariner | Tc1 | rosa | leidyi | ||
| Tc1/Mariner | Tc1 | maT/ITmD37D/Matelotis | 1, 2, 3 | ||
| Tc1/Mariner | Tc1 | Zvezda | |||
| Tc1/Mariner | Tc1 | MMTS | |||
| Tc1/Mariner | Tc1 | Incomer | |||
| Tc1/Mariner | Tc1 | Lsra | |||
| Tc1/Mariner | Tc1 | TLEWI | |||
| Tc1/Mariner | Tc1 | Traveler | |||
| Tc1/Mariner | Tc1 | Visitor/VS | |||
| Tc1/Mariner | Tc1 | Intruder | |||
| Tc1/Mariner | Tc1 | PPTN-like | |||
| Tc1/Mariner | Tc1 | mori | |||
| Tc1/Mariner | Tc1 | Ludensis | 1 | ||
| Tc1/Mariner | Mariner | ||||
| Tc1/Mariner | Mariner | mariner_Cg | |||
| Tc1/Mariner | Mariner | Tvmar | 1 | ||
| Tc1/Mariner | Mariner | mariner_invertebrates_1 | |||
| Tc1/Mariner | Mariner | mos1_Hsmar1 | 1, 2, 3 | ||
| Tc1/Mariner | Mariner | mariner_Mpnicotianae_1 | |||
| Tc1/Mariner | Mariner | mariner_Mpnicotianae_2 | |||
| Tc1/Mariner | Mariner | mariner_Mpnicotianae_3 | |||
| Tc1/Mariner | Mariner | mariner_Nematodes | |||
| Tc1/Mariner | Mariner | mariner_Metazoa | |||
| Tc1/Mariner | Mariner | mariner_Hymenoptera | |||
| Tc1/Mariner | Mariner | mariner_Metazoa_2 | |||
| Tc1/Mariner | Mariner | mariner_invertebrates_2 | |||
| Tc1/Mariner | Mariner | mariner_invertebrates_3 | |||
| Tc1/Mariner | Mariner | MareNostrum | cecropia | 12 | |
| Tc1/Mariner | Mariner | MareNostrum | mellifera | 12 | |
| Tc1/Mariner | Mariner | MareNostrum | elegans | 1 | |
| Tc1/Mariner | Mariner | MareNostrum | briggsae | 1 | |
| Tc1/Mariner | Mariner | MareNostrum | indianus | ||
| Tc1/Mariner | Mariner | MareNostrum | Cemar2 | 1 | |
| Tc1/Mariner | Mariner | MareNostrum | Chitwoodis | ||
| Tc1/Mariner | Mariner | mauritiana | 1 | ||
| Tc1/Mariner | Mariner | mauritiana | Hymenopteris | ||
| Tc1/Mariner | Mariner | mauritiana | Dipteris | ||
| Tc1/Mariner | Mariner | mauritiana | Nikananis | ||
| Tc1/Mariner | Mariner | mauritiana | Pucerornis | ||
| Tc1/Mariner | Mariner | mauritiana | Ins | ||
| Tc1/Mariner | Mariner | mauritiana | Inv | ||
| Tc1/Mariner | Mariner | capitata | 1 | ||
| Tc1/Mariner | Mariner | vertumnana | |||
| Tc1/Mariner | Mariner | irritans | |||
| Tc1/Mariner | Mariner | Atlantis | 1 | ||
| Tc1/Mariner | Mariner | Atlantis | marmoratus | 1 | |
| Tc1/Mariner | Mariner | lineata | |||
| Tc1/Mariner | Mariner | nosferatis | |||
| Tc1/Mariner | Mariner | Gallus | |||
| Tc1/Mariner | Mariner | mosellana | |||
| Tc1/Mariner | Plantmar/Chlorophyllis/ITmD39D | 12 | |||
| Tc1/Mariner | Plantmar/Chlorophyllis/ITmD39D | Viridiplantae | |||
| Tc1/Mariner | Plantmar/Chlorophyllis/ITmD39D | plantmar_Dicots_1 | |||
| Tc1/Mariner | Plantmar/Chlorophyllis/ITmD39D | plantmar_Bv | |||
| Tc1/Mariner | Plantmar/Chlorophyllis/ITmD39D | plantmar_Dicots_2 | |||
| Tc1/Mariner | Plantmar/Chlorophyllis/ITmD39D | plantmar_Dicots-Oomycota | |||
| Tc1/Mariner | Plantmar/Chlorophyllis/ITmD39D | plantmar_Monocots_1 | |||
| Tc1/Mariner | Plantmar/Chlorophyllis/ITmD39D | plantmar_Monocots_2 | |||
| Tc1/Mariner | Plantmar/Chlorophyllis/ITmD39D | plantmar_Dicots_3 | |||
| Tc1/Mariner | ITmD37E/Mosquitis | 12 | |||
| Tc1/Mariner | CRI | ||||
| Tc1/Mariner | urt | ||||
| Tc1/Mariner | Gambol | 1 | |||
| Tc1/Mariner | Guest/GT | ||||
| Tc1/Mariner | Azteca | ||||
| Tc1/Mariner | Sailor | ||||
| Tc1/Mariner | pogo | 12 | |||
| Tc1/Mariner | pogo | Fotyl | 1 | ||
| Tc1/Mariner | pogo | pogo_Hv-Sm-Al | |||
| Tc1/Mariner | pogo | pogo_Metazoa | |||
| Tc1/Mariner | pogo | pogo_invertebrates_1 | |||
| Tc1/Mariner | pogo | Fot1 | 1 | ||
| Tc1/Mariner | pogo | Fot/Fot-like/Fotis | 12 | ||
| Tc1/Mariner | pogo | Fot/Fot-like/Fotis | FotA | ||
| Tc1/Mariner | pogo | Fot/Fot-like/Fotis | FotB | ||
| Tc1/Mariner | pogo | Fot/Fot-like/Fotis | FotC | ||
| Tc1/Mariner | pogo | Fot/Fot-like/Fotis | FotD | ||
| Tc1/Mariner | pogo | Fot/Fot-like/Fotis | Fot-like | ||
| Tc1/Mariner | pogo | pogo_Selaginella | |||
| Tc1/Mariner | pogo | Tc2 | 1 | ||
| Tc1/Mariner | pogo | pogo_JR | |||
| Tc1/Mariner | pogo | CENP-B_CR_AR | |||
| Tc1/Mariner | pogo | pogo_CENP-B | |||
| Tc1/Mariner | pogo | AR_Lemi1 | 1 | ||
| Tc1/Mariner | pogo | pogo_Cgigas_1 | |||
| Tc1/Mariner | pogo | pogo_Dm | |||
| Tc1/Mariner | pogo | pogo_Cgigas_2 | |||
| Tc1/Mariner | pogo | pogo_aphids_Ct_Sk | |||
| Tc1/Mariner | pogo | pogo_TIGD6 | |||
| Tc1/Mariner | pogo | pogo_TIGD4 | |||
| Tc1/Mariner | pogo | pogo_invertebrates_2 | |||
| Tc1/Mariner | pogo | pogo_insects | |||
| Tc1/Mariner | pogo | Cirt1/ATHPOGO | 12 | ||
| Tc1/Mariner | pogo | Tigger 1 | 1 | ||
| Tc1/Mariner | pogo | pogoR | |||
| Tc1/Mariner | pogo | Passer | |||
| Tc1/Mariner | pogo | Tigger | 1 | ||
| Tc1/Mariner | pogo | Tigger | Tigger Cluster A | ||
| Tc1/Mariner | pogo | Tigger | Tigger Cluster B | ||
| Tc1/Mariner | pogo | Tigger | Tigger Cluster C | ||
| Tc1/Mariner | pogo | Tigger | Tigger Cluster D | ||
| Tc1/Mariner | pogo | Tigger | Tigger Cluster E | ||
| Tc1/Mariner | pogo | Lemi | 1 | ||
| Tc1/Mariner | pogo | Lemi | Ogris | Shrekis | |
| Tc1/Mariner | pogo | Lemi | Ogris | Barbetrouillis | |
| Tc1/Mariner | pogo | Lemi | Poucetis | Djinnis | |
| Tc1/Mariner | pogo | Lemi | Poucetis | Gnomis | |
| Tc1/Mariner | pogo | Lemi | Poucetis | Gobelinis | |
| Tc1/Mariner | pogo | Lemi | Poucetis | Hobgoblinis | |
| Tc1/Mariner | pogo | Lemi | Poucetis | Koblinis | |
| Tc1/Mariner | pogo | Lemi | Poucetis | Korriganis | |
| Tc1/Mariner | pogo | Lemi | Poucetis | Lutinis | |
| Tc1/Mariner | pogo | Lemi | Poucetis | Papilionis | |
| Tc1/Mariner | pogo | Lemi | Poucetis | Ratlyris | |
| Tc1/Mariner | pogo | Lemi | Poucetis | Solanis | |
| Tc1/Mariner | pogo | Mover | |||
| Tc1/Mariner | Melilotis | 1 | |||
| Tc1/Mariner | Japonis | 1 | |||
| Tc1/Mariner | Sonneis | 1 | |||
| hAT | hobo | ||||
| hAT | Ac | ||||
| hAT | Buster | 1 | |||
| hAT | Tip | 1 | |||
| hAT | Rover | 1 | |||
| hAT | Roamer | ||||
| hAT | Viridiplantae-group | ||||
| hAT | Fungi-group | ||||
| hAT | Mammal-group | ||||
| hAT | Teleost-group | ||||
| hAT | Ascidia-group | ||||
| hAT | Cnidaria-group | ||||
| hAT | Nematoda-group | ||||
| hAT | Insect-group | ||||
| CMC | Caspar | ||||
| CMC | TAT-1 | ||||
| CMC | Mandrake | ||||
| CMC | Isaac | 1 | |||
| CMC | Balduin | ||||
| CMC | Jorge | ||||
| CMC | Enac | ||||
| CMC | Alpha | ||||
| CMC | Beta | ||||
| CMC | Delta | ||||
| CMC | Gamma | ||||
| CMC | Epsilon | ||||
| CMC | Zeta | ||||
| CMC | Eta | ||||
| CMC | Theta | ||||
| CMC | Mirage | ||||
| CMC | Chapaev | ||||
| CMC | Chapaev3 | ||||
| CMC | TEC | ||||
| CMC | Plavaka | ||||
| Transib | |||||
| Transib | RAGL | ||||
| Transib | RAGL | RAGL_A | |||
| Transib | RAGL | RAGL_B | |||
| Transib | RAGL | RAGL_C | |||
| Transib | RAGL | RAGL_D | |||
| Transib | ProtoRAG | ||||
| Transib | TransibSU | ||||
| piggyBac | Teratorn/Albatross | 1 | |||
| piggyBac | Group 1 | ||||
| piggyBac | Group 2 | ||||
| piggyBac | Group 3 | ||||
| piggyBac | Group 4 | ||||
| piggyBac | Group 5 | ||||
| piggyBac | Metazoa 1 | ||||
| piggyBac | Metazoa 2 | ||||
| piggyBac | C. intestinalis Group | ||||
| Merlin | Microsporidean Group 1 | ||||
| Merlin | Microsporidean Group 2 | ||||
| Merlin | Microsporidean Group 3 | ||||
| Merlin | Microsporidean Group 4 | ||||
| Merlin | Microsporidean Group 5 | ||||
| Merlin | Microsporidean Group 6 | ||||
| Merlin | Microsporidean Group 7 | ||||
| Merlin | Microsporidean Group 8 | ||||
| PIF/Harbinger | PIF | ||||
| PIF/Harbinger | PIF | A1 | |||
| PIF/Harbinger | PIF | A2 | |||
| PIF/Harbinger | PIF | A3 | |||
| PIF/Harbinger | PIF | A4 | |||
| PIF/Harbinger | PIF | A5 | |||
| PIF/Harbinger | PIF | A6 | |||
| PIF/Harbinger | PIF | B | |||
| PIF/Harbinger | PIF | C | |||
| PIF/Harbinger | PIF | D | |||
| PIF/Harbinger | PIF | E | |||
| PIF/Harbinger | PIF | M | |||
| PIF/Harbinger | PIF | P | |||
| PIF/Harbinger | Harbinger | ||||
| PIF/Harbinger | Spy | ||||
| PIF/Harbinger | Pangu | ||||
| PIF/Harbinger | Nuwa | ||||
| PIF/Harbinger | ISL2EU | ||||
| PIF/Harbinger | Pong | ||||
| PIF/Harbinger | Pong | O1 | |||
| PIF/Harbinger | Pong | O2 | |||
| PIF/Harbinger | Pong | P1 | |||
| PIF/Harbinger | Pong | P2 | |||
| PIF/Harbinger | Pong | Q | |||
| PIF/Harbinger | Tourist | Tourist A | |||
| PIF/Harbinger | Tourist | Tourist B | |||
| PIF/Harbinger | Tourist | Tourist C | |||
| PIF/Harbinger | Tourist | Tourist D | |||
| IS3EU/GingerRoot | 2 | ||||
| Academ | Academ-3TSD | ||||
| Academ | Academ-4TSD | ||||
| Academ | Academ-8-9TSD | ||||
| Academ | Academ-9-10TSD | ||||
| P-element | Galileo | ||||
| P-element | Galileo-V | ||||
| P-element | Galileo-W | ||||
| P-element | 1360 | ||||
| P-element | A | ||||
| P-element | B | ||||
| P-element | C | ||||
| P-element | D | ||||
| P-element | E | ||||
| P-element | F | ||||
| P-element | G | ||||
| P-element | H | ||||
| P-element | I | ||||
| P-element | J | ||||
| P-element | K | ||||
| P-element | L | ||||
| P-element | M | ||||
| P-element | N | ||||
| P-element | O | ||||
| P-element | P | ||||
| P-element | Group 1 | ||||
| P-element | Group 2 | ||||
| P-element | Group 3 | ||||
| P-element | Group 4 | ||||
| P-element | Group 5 | ||||
| P-element | Group 6 | ||||
| P-element | Group 7 | ||||
| P-element | Group 8 | ||||
| P-element | Group 9 | ||||
| P-element | Group 10 | ||||
| P-element | Group 11 | ||||
| MUDR | Rehavkus | ||||
| MUDR | TvMULE | 1 | |||
| MUDR | Phantom-Ca | 1 | |||
| MUDR | Curupira | 1 | |||
| MUDR | MULE-Ag | ||||
| MUDR | MULE-Mucorales | ||||
| MUDR | MULE-Co | ||||
| MUDR | Ghost sub-group Cnidaria | ||||
| MUDR | Ghost | ||||
| MUDR | Spectre | ||||
| MUDR | MULE-Ov | ||||
| MUDR | MULE-Pi | ||||
| MUDR | MULE1_EI | ||||
| MUDR | MULE-Ei | ||||
| MUDR | EMULE | 1 | |||
| MUDR | MuDR-6_HM | ||||
| MUDR | MULE-Cg | ||||
| MUDR | MULE-Phytophthora_1 sub-group Sm | ||||
| MUDR | MULE-Phytophthora_1 | ||||
| MUDR | MuDRx-Phytophthora | ||||
| MUDR | MULE-Tv | ||||
| MUDR | MULE-Mollusca | ||||
| MUDR | Phantom | 1 | |||
| MUDR | MULE-Trichinella | ||||
| MUDR | Hop sub-group MULE-Cglob | 1 | |||
| MUDR | sub-group Mutyl | 1 | |||
| MUDR | sub-group plants, Phytophthora, Puccinia and Fungi | ||||
| MUDR | sub-group Fungi | ||||
| MUDR | Jittery sub-group MULE-Cc | 1 | |||
| MUDR | sub-group Dicots and Monocots | ||||
| MUDR | MULE-Diatoms | ||||
| MUDR | MULE-Cc | ||||
| MUDR | MULE-Phytophthora_2 | ||||
| MUDR | MuDR-4_Sm | ||||
| MUDR | MULE-Cm | ||||
| MUDR | MULE-Solanaceae_1 | ||||
| MUDR | MULE-Capsicum | ||||
| MUDR | MULE-Solanaceae_2 | ||||
| MUDR | VANDAL | 1 | |||
| MUDR | MuDR-9_OS | ||||
| MUDR | MULE-Monocots | ||||
| MUDR | MDR | ||||
| MUDR | MUDRAVI2 | 1 | |||
| MUDR | MUDR | 1 | |||
| MUDR | sub-group Phytophthora | ||||
| MUDR | sub-group MUDRAVI | 1 | |||
| MUDR | Abermu | ||||
| Kolobok | Kolobok0 | ||||
| Kolobok | Kolobok1 | ||||
| Kolobok | Kolobok2 | ||||
| Kolobok | Kolobok3 | ||||
| Kolobok | Kolobok4 | ||||
| Kolobok | Kolobok5 | ||||
| Kolobok | KolobokD | ||||
| Kolobok | KolobokE | ||||
| Kolobok | KolobokH | ||||
| Kolobok | KolobokP | ||||
| Helitron | Hel1 | ||||
| Helitron | FoHeli | ||||
| Helitron | Helentron | ||||
| Helitron | HeligloriaA | ||||
| Helitron | HeligloriaB | ||||
| Helitron | Heliminu | ||||
| Helitron | Helisimi | ||||
| Helitron | Lep1 | ||||
| Helitron | Helianu | ||||
| Helitron | Hel1a | ||||
| Maverick/Polinton | Group 1 | ||||
| Maverick/Polinton | Group 2 | ||||
| Maverick/Polinton | EMALE | ||||
| Crypton | A | ||||
| Crypton | F | ||||
| Crypton | I | ||||
| Crypton | S | ||||
| Crypton | V | ||||
| Tyroson/Starship | Tyroson | ||||
| Tyroson/Starship | Starship | ||||
| Zisupton | Zisupton | ||||
| Zisupton | Dileera | ||||
| Zisupton | Kyakuja | ||||
| Penelope | EN(-) | ||||
| Penelope | EN(+) | ||||
| Penelope | Neptune | ||||
| Penelope | Nematis | ||||
| Penelope | Perere | ||||
| Penelope | Athena | ||||
| Penelope | Poseidon | ||||
| Penelope | Cercyon | ||||
| Penelope | Osiris | ||||
| Penelope | Coprina | ||||
| Penelope | CA Clade | ||||
| Penelope | Dryad | ||||
| Penelope | Naiad | ||||
| Penelope | Chlamys | ||||
| Penelope | Hydra | ||||
| Terminon | Terminon | ||||
| Ty3/Gypsy | Chromovirus | ||||
| Ty3/Gypsy | Non-Chromovirus | ||||
| Ty3/Gypsy | OTA | ||||
| Ty3/Gypsy | Chlamyvir | ||||
| Ty3/Gypsy | Tcn1 | 1 | |||
| Ty3/Gypsy | Galadriel | ||||
| Ty3/Gypsy | Tekay | ||||
| Ty3/Gypsy | Del | ||||
| Ty3/Gypsy | Reina | ||||
| Ty3/Gypsy | CRM | ||||
| Ty3/Gypsy | CRM | CR1 | |||
| Ty3/Gypsy | CRM | CR2 | |||
| Ty3/Gypsy | CRM | CR3 | |||
| Ty3/Gypsy | CRM | CR4 | |||
| Ty3/Gypsy | CRM | CR5 | |||
| Ty3/Gypsy | CRM | CR6 | |||
| Ty3/Gypsy | CRM | Cereba | |||
| Ty3/Gypsy | Hypo | ||||
| Ty3/Gypsy | Chromo-Unclassified | ||||
| Ty3/Gypsy | Phygy | ||||
| Ty3/Gypsy | Selgy | ||||
| Ty3/Gypsy | REM | ||||
| Ty3/Gypsy | G-Rhodo | ||||
| Ty3/Gypsy | TF1-2 | 1 | |||
| Ty3/Gypsy | Pyggy | 1 | |||
| Ty3/Gypsy | MGLR3 | 1 | |||
| Ty3/Gypsy | Maggy | 1 | |||
| Ty3/Gypsy | MarY1 | 1 | |||
| Ty3/Gypsy | Pyret | 1 | |||
| Ty3/Gypsy | V-Clade | 1 | |||
| Ty3/Gypsy | Ty3 | ||||
| Ty3/Gypsy | Skipper | ||||
| Ty3/Gypsy | Tse3 | ||||
| Ty3/Gypsy | CsRN1 | ||||
| Ty3/Gypsy | 412/mdg1 | 1, 2 | |||
| Ty3/Gypsy | Gypsy | ||||
| Ty3/Gypsy | 17.6 | ||||
| Ty3/Gypsy | Osvaldo | 1 | |||
| Ty3/Gypsy | Gmr1 | ||||
| Ty3/Gypsy | Cer2-3 | ||||
| Ty3/Gypsy | Cer1 | ||||
| Ty3/Gypsy | Mag | 1 | |||
| Ty3/Gypsy | A-Clade | ||||
| Ty3/Gypsy | B-Clade | ||||
| Ty3/Gypsy | C-Clade | ||||
| Ty3/Gypsy | Tor1 | ||||
| Ty3/Gypsy | Tor2 | ||||
| Ty3/Gypsy | Tor4 | ||||
| Ty3/Gypsy | Cigr-1 | ||||
| Ty3/Gypsy | Micropia/Mdg3 | 1, 2 | |||
| Ty3/Gypsy | Archon | ||||
| Ty3/Gypsy | Chronos | ||||
| Ty3/Gypsy | Ogre | ||||
| Ty3/Gypsy | Athila | ||||
| Ty3/Gypsy | TatI | 1 | |||
| Ty3/Gypsy | TatII | ||||
| Ty3/Gypsy | TatIII | ||||
| Ty3/Gypsy | Retand | ||||
| Ty3/Gypsy | Tat | ||||
| Ty3/Gypsy | MolGy1 | ||||
| Ty3/Gypsy | MolGy2 | ||||
| Ty3/Gypsy | MolGy3 | ||||
| Ty3/Gypsy | MolGy4 | ||||
| Ty3/Gypsy | MolGy5 | ||||
| Ty3/Gypsy | MolGy6 | ||||
| Ty3/Gypsy | MolGy7 | ||||
| Ty3/Gypsy | MolGy8 | ||||
| Ty3/Gypsy | MolGy10 | ||||
| Ty3/Gypsy | MolGy11 | ||||
| Ty3/Gypsy | MolGy12 | ||||
| Ty3/Gypsy | MolGy13 | ||||
| Ty3/Gypsy | MolGy14 | ||||
| Ty3/Gypsy | MolGy16 | ||||
| Ty3/Gypsy | MolGy17 | ||||
| Ty3/Gypsy | MolGy18 | ||||
| Ty3/Gypsy | ReTe1 | ||||
| Ty3/Gypsy | Saci-2 | 1 | |||
| Ty3/Gypsy | Mlig-specific | ||||
| Ty3/Gypsy | Osiris | ||||
| Ty3/Gypsy | Ulysses | 1 | |||
| Ty3/Gypsy | Isis | 1 | |||
| Ty3/Gypsy | Isis-like | ||||
| Ty3/Gypsy | Blastopia | 1 | |||
| Ty3/Gypsy | Sacco | ||||
| Ty3/Gypsy | Chimpo | 1 | |||
| Ty3/Gypsy | Bica | 1 | |||
| Ty3/Gypsy | Helos1 | ||||
| Ty3/Gypsy | GyDi1 | ||||
| Ty3/Gypsy | GyDi2 | ||||
| Ty3/Gypsy | Tag | ||||
| Ty3/Gypsy | GEC1 | ||||
| Ty3/Gypsy | GEC2 | ||||
| Ty3/Gypsy | GyRex1-like | ||||
| Ty3/Gypsy | GyPemo2-like | ||||
| Ty3/Gypsy | Dingle | ||||
| Ty3/Gypsy | YLT1 | 1 | |||
| Ty3/Gypsy | SN_1006 | ||||
| Ty3/Gypsy | Laccy1 | ||||
| Ty3/Gypsy | Nessie | ||||
| Ty3/Gypsy | Yeti | 1 | |||
| Ty3/Gypsy | Coccy1 | ||||
| Ty3/Gypsy | Coccy2 | ||||
| Ty3/Gypsy | Polly | 1 | |||
| Ty3/Gypsy | Afut1 | 1 | |||
| Ty3/Gypsy | Tcn2 | 1 | |||
| Ty3/Gypsy | Puccy1 | ||||
| Ty3/Gypsy | Puccy2 | ||||
| Ty3/Gypsy | Laccy2 | ||||
| Ty3/Gypsy | Afut4 | 1 | |||
| Ty3/Gypsy | Galahad | ||||
| Ty3/Gypsy | Mordred | ||||
| Ty3/Gypsy | Tcn1-like Unclassified A | ||||
| Ty3/Gypsy | Tcn1-like Unclassified B | ||||
| Ty3/Gypsy | Tcn1-like Unclassified C | ||||
| Ty3/Gypsy | Tcn1-like Unclassified D | ||||
| Ty3/Gypsy | Tcn1-like Unclassified F | ||||
| Ty3/Gypsy | LGF2 | ||||
| Ty3/Gypsy | LGF4 | ||||
| Ty3/Gypsy | LGF7 | ||||
| Ty3/Gypsy | LGF8 | ||||
| Ty3/Gypsy | LGF9 | ||||
| Ty3/Gypsy | CO-HUI | Betania | |||
| Ty3/Gypsy | CO-HUI | Amani | |||
| Ty3/Gypsy | CO-HUI | Andes | |||
| Ty3/Gypsy | CO-HUI | Peregrino | |||
| Ty3/Gypsy | Soroa | Retaso | |||
| Ty3/Gypsy | Soroa | Inspector | |||
| Ty3/Gypsy | Soroa | JCO | |||
| Ty3/Gypsy | Baco | ||||
| Ty1/Copia | CoDi-A/CoDi-I | 1 | |||
| Ty1/Copia | CoDi-B/CoDi-II | 1 | |||
| Ty1/Copia | CoDi-C | 1 | |||
| Ty1/Copia | CoDi-D | 1 | |||
| Ty1/Copia | Bryco | ||||
| Ty1/Copia | Lyco | ||||
| Ty1/Copia | Oryco | ||||
| Ty1/Copia | Retrofit | 1 | |||
| Ty1/Copia | Osser | 1 | |||
| Ty1/Copia | PyRE1G1 | 1 | |||
| Ty1/Copia | Hydra | ||||
| Ty1/Copia | Ty/Pseudovirus | ||||
| Ty1/Copia | Copia | Young, M. W., Hogness, D. S. (1977). A new approach for identifying and mapping structural genes in Drosophila melanogaster. In Molecular Approaches to Eukaryotic Genetic Systems: ICNIUCLA Symposia on Molecular and Cellular Biology, VIII, G. Wilcox, J. Abelson and C. F. Fox, eds. (New York: Academic Press), pp. 315-331. | |||
| Ty1/Copia | 1731 | 1 | |||
| Ty1/Copia | Tricopia | ||||
| Ty1/Copia | Mtanga | 1 | |||
| Ty1/Copia | Humnum | ||||
| Ty1/Copia | pCretro | 1 | |||
| Ty1/Copia | Gymco-I | ||||
| Ty1/Copia | Gymco-II | ||||
| Ty1/Copia | Gymco-III | ||||
| Ty1/Copia | Gymco-IV | ||||
| Ty1/Copia | Ale | ||||
| Ty1/Copia | Ivana | ||||
| Ty1/Copia | Ikeros | ||||
| Ty1/Copia | Tork | ||||
| Ty1/Copia | Alesia | ||||
| Ty1/Copia | Angela | ||||
| Ty1/Copia | Angela | MARTIANS | |||
| Ty1/Copia | Bianca | ||||
| Ty1/Copia | SIRE | 1 | |||
| Ty1/Copia | TAR | ||||
| Ty1/Copia | Maximus | ||||
| Ty1/Copia | Hopscotch | ||||
| Ty1/Copia | Tnt1 | ||||
| Ty1/Copia | Tos17 | ||||
| Ty1/Copia | Tont1 | ||||
| Ty1/Copia | GalEA | 1 | |||
| Ty1/Copia | FunCo1 | ||||
| Ty1/Copia | FunCo2 | ||||
| Ty1/Copia | FunCo3 | ||||
| Ty1/Copia | FunCo4 | ||||
| Ty1/Copia | FunCo5 | ||||
| Ty1/Copia | FunCo6 | ||||
| Ty1/Copia | FunCo7 | ||||
| Ty1/Copia | FunCo9 | ||||
| Ty1/Copia | FunCo10 | ||||
| Ty1/Copia | FunCo11 | ||||
| Ty1/Copia | FunCo14 | ||||
| Ty1/Copia | FunCo15 | ||||
| Ty1/Copia | FunCo16 | ||||
| Ty1/Copia | FunCo17 | ||||
| Ty1/Copia | FunCo18 | ||||
| Ty1/Copia | FunCo19 | ||||
| Ty1/Copia | FunCo21 | ||||
| Ty1/Copia | FunCo22 | ||||
| Ty1/Copia | FunCo23 | ||||
| Ty1/Copia | FunCo24 | ||||
| Ty1/Copia | FunCo25 | ||||
| Ty1/Copia | FunCo26 | ||||
| Ty1/Copia | FunCo27 | ||||
| Ty1/Copia | Copia2 | 1 | |||
| Ty1/Copia | Copiabis | ||||
| Ty1/Copia | Copia2bis | ||||
| Ty1/Copia | Xanthias | 1 | |||
| Ty1/Copia | New Xanthias | ||||
| Ty1/Copia | CEC1 | ||||
| Ty1/Copia | CEC2 | ||||
| Ty1/Copia | CEC3 | ||||
| Ty1/Copia | CEC4 | ||||
| Ty1/Copia | CoLesa1-like | ||||
| Ty1/Copia | CoDpu | 1 | |||
| Ty1/Copia | Labe | ||||
| Ty1/Copia | Mapi | ||||
| DIRS | DIRS | 1 | |||
| DIRS | Ngaro | ||||
| DIRS | VIPER | ||||
| DIRS | TATE | 1 | |||
| DIRS | PAT | 1, 2 | |||
| DIRS | AlDIRS1 | ||||
| BEL/Pao | Sinbad | 1 | |||
| BEL/Pao | BEL | ||||
| BEL/Pao | Pao | ||||
| BEL/Pao | Tas | 1 | |||
| BEL/Pao | Suzu | ||||
| BEL/Pao | Flow | ||||
| BEL/Pao | Dan | ||||
| BEL/Pao | Ninja | 1 | |||
| BEL/Pao | Diver | 1, 2 | |||
| BEL/Pao | Diver2 | 1, 2 | |||
| BEL/Pao | Belmondo | ||||
| BEL/Pao | Belmondo2 | ||||
| BEL/Pao | Batumi/Max | 1, 2, 3 | |||
| BEL/Pao | Roo/RooA | 1, 2, 3 | |||
| BEL/Pao | Sparrow | ||||
| BEL/Pao | Surcouf | ||||
| BEL/Pao | BEC1 | ||||
| BEL/Pao | BEC2 | ||||
| BEL/Pao | BEC3 | ||||
| BEL/Pao | BEC4 | ||||
| BEL/Pao | BEC5 | ||||
| Odin | |||||
| LINE | Hamp | ||||
| LINE | LEC1 | ||||
| LINE | LEC2 | ||||
| LINE | LEC3 | ||||
| LINE | Soliton | ||||
| R2 | R2-A1 | ||||
| R2 | R2-A2 | ||||
| R2 | R2-A3 | ||||
| R2 | R9 | ||||
| R2 | R2-B1 | ||||
| R2 | R2-B2 | ||||
| R2 | R2-C1 | ||||
| R2 | R2-D1 | ||||
| R2 | R2-D2 | ||||
| R2 | R2-D3 | ||||
| R2 | R2-D4 | ||||
| R2 | R2-D5 | ||||
| R2 | R8 | ||||
| R2? | BLAG | ||||
| R1 | R6 | ||||
| R1 | RT | ||||
| R1 | R7 | ||||
| R1 | Mino | ||||
| R1 | Waldo | ||||
| R1 | SART | ||||
| R1 | TRAS | ||||
| NeSL | Utopia | ||||
| NeSL | R5 | ||||
| Tx1 | Keno | ||||
| Tx1 | Mutsu | ||||
| Tx1 | Kibi | ||||
| L1 | Vetebrate Group | ||||
| L1 | Plant Group | ||||
| L1 | Group A | ||||
| L1 | Group B | ||||
| L1 | Group C | ||||
| L1 | LIb | 1 | |||
| L1 | LINE-CS | 1 | |||
| L1 | BNR | ||||
| L1 | PUR | ||||
| L1 | nubo | 1 | |||
| L1 | Karma | 1 | |||
| L1 | cin4 | 1 | |||
| L1 | Tal1 | ||||
| L1 | Algal | 1 | |||
| L1 | Oomycete | ||||
| L1 | M | ||||
| L1 | F | ||||
| L1 | ME1 | ||||
| L1 | ME2 | ||||
| L1 | ME3 | ||||
| L1 | Mammals | ||||
| L1 | Lizard clade 1 | ||||
| L1 | Lizard clade 2 | ||||
| L1 | Frog clade 1 | ||||
| L1 | Frog clade 2 | ||||
| L1 | Fish clade 1 | ||||
| L1 | Fish clade 2 | ||||
| RTE | Plant/Animal | 1 | |||
| RTE | Rex3/RTE | 1 | |||
| RTE | BovB | 1, 2 | |||
| RTE | BovB-IA | ||||
| RTE | BovB-IB | ||||
| RTE | BovB-II | ||||
| RTE | C. elegans/Bombyx RTE | 1 | |||
| RTE | I | ||||
| RTE | II | ||||
| RTE | II | ||||
| RTE | IV | ||||
| RTE | V | ||||
| RTE | VI | ||||
| RTE | VII | ||||
| RTE | ORTE | ||||
| Jockey | Lin1 | ||||
| Jockey | Lin2 | ||||
| Jockey | Lin3 | ||||
| Jockey | Lin4 | ||||
| Jockey | Lin5 | ||||
| Jockey | Lin6 | ||||
| Jockey | Lin7 | ||||
| Jockey | Syrinx | ||||
| Jockey | Hebe | ||||
| CR1 | CR1A | ||||
| CR1 | CR1B | ||||
| CR1 | Group A | ||||
| CR1 | Group B | ||||
| CR1 | Group C | ||||
| CR1 | Group D | ||||
| CR1 | Group E | ||||
| CR1 | Group F | ||||
| CR1 | Group G | ||||
| Rex1 | 1 | ||||
| Rex1 | 2 | ||||
| Rex1 | 3 | ||||
| Rex1 | 4 | ||||
| Rex1 | Babar |