This page compiles a list of databases for the storage of sequences and metadata associated with repetitive, mobile and selfish DNA.
It is maintained by Tyler A. Elliott. It was initiated with the help of Elizabeth Smikle and Miduna Rahulan, formerly at the Centre for Biodiversity Genomics at the University of Guelph. Suggestions, updates and error corrections are welcome. Please feel free to add missing databases into the table, that would help a lot!
For resources more tailored to Prokaryotes and Viruses, see the linked lists.
| Resource | DOI | Taxonomic Group | Repeat Types | Status |
|---|---|---|---|---|
| 3'UTR-SIRF | https://doi.org/10.1186/1471-2105-8-274 | Mammal | SINE | Absent (Apr 28 2025) |
| ACLAME | https://doi.org/10.1093/nar/gkp938 | Archaea, Bacteria | Plasmid, Virus | Absent (Apr 28 2025) |
| Actinobacteriophage Database (PhagesDB) | https://doi.org/10.1093/bioinformatics/btw711 | Bacteria | Prophage/Bacteriophage | Absent (Apr 28 2025) |
| alu_ontology | https://doi.org/10.1016/j.jbi.2016.01.010 | Homo sapiens | Alu, SINE | Absent (Apr 28 2025) |
| APTEdb (Atlas of Plant Transposable Elements Database) | https://f1000research.com/articles/10-1194/v1 | Land Plant, Algae | Eukaryotic Transposon | Present (Apr 28 2025) |
| ARDB (Antibiotic Resistance Genes Database) | https://doi.org/10.1093/nar/gkn656 | Archaea, Bacteria | AMR/Antibiotic Resistance | Present (Apr 28 2025) |
| ArTEDB (Arthropod Transposable Elements Database) | https://doi.org/10.3390/genes10050338 | Arthropod | Eukaryotic Transposon | |
| Bamboo Microsatellite Database | https://doi.org/10.1038/srep08018 | Phyllostachys | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| BanSatDB (Banana Satellite Database) | https://doi.org/10.1016/j.cj.2018.01.005 | Musa | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| BeetRepeats | https://doi.org/10.1186/s13104-024-06993-4 | Beta, Patellifolia, Chenopodium, Spinacia | Eukaryotic Repeat | Absent (Apr 28 2025) |
| Bivalvia_TEs | https://doi.org/10.1186/s12915-023-01632-z | Bivalvia | Eukaryotic Transposon | Present (Apr 28 2025) |
| BMTEdb (Bombyx mori Transposable Elements Database) | https://doi.org/10.1093/database/bat055 | Bombyx mori | Eukaryotic Transposon | |
| Boechera Microsatellite Database | https://doi.org/10.1093/database/baw169 | Boechera | Simple Sequence Repeat/Microsatellite | Present (Apr 28 2025) |
| Brassica TE Db | https://doi.org/10.1186/1756-0500-7-379 | Brassica rapa, Brassica oleracea | Eukaryotic Transposon | |
| BuffSatDB (Buffalo Satellite Database) | https://doi.org/10.1186/1471-2164-14-43 | Bubalis bubalis | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| CAGm (Comparative Analysis of Germline Microsatellites) | https://doi.org/10.1093/nar/gky969 | Homo sapiens | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| CARD (Comprehensive Antibiotic Resistance Database) | https://doi.org/10.1093/nar/gkz935 | Archaea, Bacteria | AMR/Antibiotic Resistance | Present (Apr 28 2025) |
| CarnationDB | https://doi.org/10.1093/dnares/dst053 | Plant, Dianthus | Eukaryotic Repeat | Absent (Apr 28 2025) |
| CGATE (Catalogue of Genes Affected by Transposable Elements) | https://doi.org/10.1186/1759-8753-3-9 | Plant, Animal | Eukaryotic Transposon | Present (Apr 28 2025) |
| ChloroMitoSSRDB 2.0 | https://doi.org/10.1093/database/bav084 | Eukaryote | Organelle Microsatellite | Absent (Apr 28 2025) |
| CiArMiSatDB (Cicer arietinum Microsattellite Database) | https://doi.org/10.1186/1471-2105-15-212 | Plant, Cicer | Simple Sequence Repeat/Microsatellite | Present (Apr 28 2025) |
| CicerSpTEdb (Cicer Species TE Database | https://doi.org/10.1371/journal.pone.0259540 | Plant, Cicer | Eukaryotic Transposon | Present (Apr 28 2025) |
| CicerSpTEdb 2.0 (Cicer Species TE Database | https://doi.org/10.1007/978-1-0716-3389-2_6 | Plant, Cicer | Eukaryotic Transposon | Present (Apr 28 2025) |
| CMD (Cotton Microsatellite Database) | https://doi.org/10.1186/1471-2164-7-132 | Gossypium | Simple Sequence Repeat/Microsatellite | |
| CmMDb (Cucumis melo Microsatellite Database) | https://doi.org/10.1371/journal.pone.0118630 | Cucumis melo | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| Colouration mutations in animals | https://doi.org/10.1016/j.tig.2023.04.005 | Animal | Eukaryotic Transposon | |
| ConTEdb (Conifer Transpoable Elements Database) | https://doi.org/10.1093/database/bay131 | Picea | Eukaryotic Transposon | Absent (Apr 28 2025) |
| CyanoSat | https://doi.org/10.1007/s11274-016-2061-0 | Cyanobacteria | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| dbRIP (Database of Retrotransposon Insertion Polymorphisms) | https://doi.org/10.1002/humu.20307 | Homo sapiens | Eukaryotic Retrotransposon | Absent (Apr 28 2025) |
| Dfam Respository | https://doi.org/10.1093/nar/gkv1272 | Vertebrate | Eukaryotic Repeat | Present (Apr 28 2025) |
| Dfam | https://doi.org/10.1093/nar/gkv1272 | Eukaryote | Eukaryotic Repeat | Present (Apr 28 2025) |
| Digs for EVEs Db | https://www.researchgate.net/project/DIGS-for-EVEs | Vertebrate | EVE/Endogenous Viral Element | Absent (Apr 28 2025) |
| DPTEdb (Dioecious Plants Transposable Elements Database) | https://doi.org/10.1093/database/baw078 | Dioecious Plant | Eukaryotic Transposon | Absent (Apr 28 2025) |
| DROPOSON | https://doi.org/10.1093/bioinformatics/13.1.61 | Drosophila | Eukaryotic Transposon | |
| Drosophila TEs Github | Drosophila | Eukaryotic Transposon | Present (Apr 28 2025) | |
| efam | https://doi.org/10.1093/bioinformatics/btab451 | All | Virus | Absent (Apr 28 2025) |
| Eggplant Microsatellite Database | https://doi.org/10.3389/fpls.2018.00401 | Solanum melogena | Simple Sequence Repeat/Microsatellite | Present (Apr 28 2025) |
| EnHERV | https://doi.org/10.1371/journal.pone.0177119 | Homo sapiens | ERV/Endogenous Retrovirus | Absent (Apr 28 2025) |
| EuGI (Eukaryotic Genomic Islands) | https://doi.org/10.1186/s12864-018-4724-8 | Eukaryote | Genomic Island | Absent (Apr 28 2025) |
| euL1db (European LINE1Hs Database) | https://doi.org/10.1093/nar/gku1043 | Homo sapiens | LINE1, LINE/non-LTR Retrotransposon | Absent (Apr 28 2025) |
| EuMicroSatdb (Eukaryotic Microsatellite Database) | https://doi.org/10.1186/1471-2164-8-225 | Eukaryote | Simple Sequence Repeat/Microsatellite | |
| FabriEVEs | https://doi.org/10.1101/529354 | Animal | EVE/Endogenous Viral Element | Absent (Apr 28 2025) |
| FishMicrosat | https://doi.org/10.1186/1471-2164-14-630 | Fish | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| FishTEDB | https://doi.org/10.1093/database/bax106 | Fish | Eukaryotic Transposon | Absent (Apr 28 2025) |
| FlyTE | Drosophila melanogaster | Eukaryotic Transposon | Absent (Apr 28 2025) | |
| Foxtail millet Transposable Elements-based Marker Database | https://doi.org/10.1093/dnares/dsu039 | Setaria italica | Eukaryotic Transposon | |
| Galileo AMR | https://doi.org/10.1093/jac/dkx513 | Bacteria | Prokaryotic MGE | Absent (Apr 28 2025) |
| Gebret (Genome-Wide Browser for Retroelements) | https://doi.org/10.1007/s13258-011-0103-4 | Primate | Eukaryotic Transposon | Absent (Apr 28 2025) |
| gEVE | https://doi.org/10.1093/database/baw087 | Mammal | EVE/Endogenous Viral Element | Absent (Apr 28 2025) |
| GinMicrosatDb | https://doi.org/10.1007/s12298-018-0558-8 | Sesamum indicum | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| Globe Artichoke Microsatellite Database | https://doi.org/10.17660/ActaHortic.2016.1147.41 | Cynara cardunculus | Simple Sequence Repeat/Microsatellite | Present (Apr 28 2025) |
| Gramene Microsatellites | https://doi.org/10.1093/nar/gkq1148 | Oryza | Simple Sequence Repeat/Microsatellite | Present (Apr 28 2025) |
| Group I Intron Database | https://doi.org/10.1093/nar/gkm766 | Bacteria | Group I Mobile Intron | Absent (Apr 28 2025) |
| GrTEdb (Gossypium raimondii Transposable Elements Database) | https://doi.org/10.1093/database/bax013 | Gossypium raimondii | Eukaryotic Transposon | |
| GtRNAdb (Genomic tRNA Database) | https://doi.org/10.1093/nar/gkv1309 | All | tRNA | Absent (Apr 28 2025) |
| GyDB 2.0 (Gypsy Database) | https://doi.org/10.1093/nar/gkq1061 | Eukaryote | LTR Retrotransposon | Absent (Apr 28 2025) |
| HelDB | https://doi.org/10.1111/jse.12929 | Eukaryote | Helitron | Present (Apr 28 2025) |
| HERV Pparser | https://doi.org/10.1080/15384101.2015.1022696 | Homo sapiens | ERV/Endogenous Retrovirus | Absent (Apr 28 2025) |
| HERVd Atlas | https://doi.org/10.1093/nar/gkad904 | Homo sapiens | ERV/Endogenous Retrovirus | Absent (Apr 28 2025) |
| HERVd | https://doi.org/10.1093/nar/30.1.205 | Homo sapiens | ERV/Endogenous Retrovirus | Present (Apr 28 2025) |
| HESAS (HERVs Expression and Structure Analysis System) | https://doi.org/10.1093/bioinformatics/bti194 | Homo sapiens | ERV/Endogenous Retrovirus | Absent (Apr 28 2025) |
| HeteroGenome | https://doi.org/10.1093/database/bau040 | Model Eukaryote | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| HMEID (Human Mobile Element Insertion Database) | https://doi.org/10.1093/nar/gkac128 | Homo sapiens | Eukaryotic Transposon | Present (Apr 28 2025) |
| HTT-db (Horizontal Transposon Transfer Database) | https://doi.org/10.1093/database/bax102 | Animal, Plant, Fungi, Protist | Eukaryotic Transposon | Absent (Apr 28 2025) |
| ICEberg | https://doi.org/10.1093/nar/gkad935 | Bacteria | ICE/Integrative and Conjugative Element | Absent (Apr 28 2025) |
| iMITEDB (Insect MITE Database) | https://doi.org/10.1093/database/baw148 | Insecta | MITE, ITR/TIR/DNA Transposon | |
| ImmeDB | https://doi.org/10.1371/journal.pone.0223680 | Bacteria | Prokaryotic MGE | Present (Apr 28 2025) |
| ImtRDB (Imperfect Mitochondrial Repeats Database) | https://doi.org/10.1186/s12864-019-5536-1 | Metazoa | Mitochondrial Repeat | Absent (Apr 28 2025) |
| InpactorDB | https://doi.org/10.1007/978-1-0716-3389-2_3 | Plant | LTR Retrotransposon | Absent (Apr 28 2025) |
| INPHARED | https://doi.org/10.1089/phage.2021.0007 | Bacteria | Prophage/Bacteriophage | Present (Apr 28 2025) |
| InSatDb (Insect Satellite Database) | https://doi.org/10.1093/nar/gkl778 | Insecta | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| intact-LTR-RTs | https://doi.org/10.1038/s41597-021-00968-x | Land Plant | LTR Retrotransposon | Absent (Apr 28 2025) |
| Integrall | https://doi.org/10.1093/bioinformatics/btp105 | Bacteria | Integron | Absent (Apr 28 2025) |
| Intein Database | https://doi.org/10.1093/nar/30.1.383 | Bacteria | Intein | Present (Apr 28 2025) |
| ISFinder | https://doi.org/10.1093/nar/gkj014 | Archaea, Bacteria | IS Element, Archaeal/Bacterial Transposon | Absent (Apr 28 2025) |
| Islander | https://doi.org/10.1093/nar/gku1072 | Prokaryote | Genomic Island | Present (Apr 28 2025) |
| Kazusa Marker DataBase | https://doi.org/10.1270/jsbbs.64.264 | Land Plant | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| KTED | https://doi.org/10.1093/bioadv/vbae179 | Homo sapiens | Eukaryotic Transposon, Eukaryotic Retrotransposon | Absent (Apr 28 2025) |
| L1Base | https://doi.org/10.1093/nar/gkw925 | Mammal | LINE1, LINE/non-LTR Retrotransposon | Absent (Apr 28 2025) |
| LAGLIDADG Enzyme Db | https://doi.org/10.1093/nar/gks365 | Bacteria | Homing Endonuclease | Absent (Apr 28 2025) |
| LeishMicrosatDB | https://doi.org/10.1093/database/bau078 | Leishmania | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| LINE fusion genes | https://doi.org/10.1186/1471-2164-7-139 | Homo sapiens | LINE/non-LTR Retrotransposon | Absent (Apr 28 2025) |
| MacroPopGen (Microsatellite Population Genetics Database) | https://doi.org/10.1038/s41597-019-0024-7 | Homo sapiens | Simple Sequence Repeat/Microsatellite | Present (Apr 28 2025) |
| Maize TE Consortium | Zea mays | Repeat | Present (Apr 28 2025) | |
| Maize TE Database | Zea mays | Eukaryotic Transposon | Present (Apr 28 2025) | |
| MasiveDB | https://doi.org/10.1186/1471-2164-13-158 | Plant | Sirevirus, LTR Retrotransposon | Absent (Apr 28 2025) |
| MDTE DB (MicroRNAs Derived from Transposable Elements Database) | https://doi.org/10.1109/TCBB.2015.2511767 | Mammal | Eukaryotic Transposon | Absent (Apr 28 2025) |
| MICdb (Microsatellites Database) | https://doi.org/10.1093/nar/gkg002 | Bacteria | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| Microorganisms Tandem Repeats Database | Tandem Repeat | Absent (Apr 28 2025) | ||
| Microsatellites/Tandem Repeats database | Archaea, Bacteria | Simple Sequence Repeat/Microsatellite | Present (Apr 28 2025) | |
| microTranspogene | https://doi.org/10.1093/nar/gkm949 | Absent (Apr 28 2025) | ||
| MitoSatPlant | https://doi.org/10.1016/j.mito.2014.02.002 | Plant | Mitochondrial Microsatellite | |
| MMDB (Magnaporthe Microsatellite Database) | https://doi.org/10.6026/97320630012388 | Magnaporthe oryzae | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| MMDBJ (Mouse Microsatellite Database of Japan) | https://doi.org/10.1538/expanim.53.151 | Mus musculus | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| MMSat | https://doi.org/10.1016/j.gene.2007.11.007 | Eukaryote, Archaea, Bacteria, Virus | Simple Sequence Repeat/Microsatellite, Minisatellite | Absent (Apr 28 2025) |
| MnTEdb (Morus notabilis Transposable Elements Database) | https://doi.org/10.1093/database/bav004 | Morus notabilis | Eukaryotic Transposon | Present (Apr 28 2025) |
| mobileOG-db (Mobile Orthologous Groups Database) | https://doi.org/10.1101/2021.08.27.457951 | Archaea, Bacteria | Prophage/Bacteriophage, Archaeal/Bacterial Transposon, IS Element, Plasmid | Present (Apr 28 2025) |
| Mosquito Transposon Database | Animal, Culicidae | Eukaryotic Transposon | Absent (Apr 28 2025) | |
| MRD (Microsatellite Repeats Database) | https://doi.org/10.1186/gb-2002-3-12-preprint0011 | Eukaryote, Archaea, Bacteria | Simple Sequence Repeat/Microsatellite | Present (Apr 28 2025) |
| MSDB (Microsatellite Database) | https://doi.org/10.1093/gbe/evx132 | All | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| msRepDB | https://doi.org/10.1093/nar/gkab563 | Eukaryote, Archaea, Bacteria | Repeat | Present (Apr 28 2025) |
| MusatransSSRDB (Musa Transcriptome Simple Sequence Repeat Database) | https://doi.org/10.1007/s12038-018-9819-5 | Musa | Simple Sequence Repeat/Microsatellite | Present (Apr 28 2025) |
| MycoMeth Repeats | https://doi.org/10.1038/s41559-019-0810-9 | Fungi | Eukaryotic Transposon | Present (Apr 28 2025) |
| OGDD (Olive Genetic Diversity Database) | https://doi.org/10.1093/database/bav090 | Olea europaea | Simple Sequence Repeat/Microsatellite | |
| oriTDB | https://doi.org/10.1093/nar/gkae869 | Bacteria | Plasmid, ICE/Integrative and Conjugative Element | Absent (Apr 28 2025) |
| Orthoptera-TElib | https://doi.org/10.1186/s13100-024-00316-x | Orthoptera | Eukaryotic Transposon | Present (Apr 28 2025) |
| Oryza and Gramineae Repeat Database | https://doi.org/10.1093/nar/gkh099 | Oryza | Repeat | Absent (Apr 28 2025) |
| P-MITE (Plant MITEs) | https://doi.org/10.1093/nar/gkt1000 | Plant | MITE, ITR/TIR/DNA Transposon | |
| Papaya Repeat Database | https://doi.org/10.1007/978-1-4614-8087-7_13 | Carica papaya | Repeat | |
| Pathogenicity Island Database | https://doi.org/10.1093/nar/gku985 | Archaea, Bacteria | Pathogenicity Island | Present (Apr 28 2025) |
| PGSB Repeat Database/mipsREDdat | https://doi.org/10.1093/nar/gkv1130 | Plant | Repeat | Absent (Apr 28 2025) |
| Phisite | https://doi.org/10.1093/nar/gkp911 | Archaea, Bacteria | Prophage/Bacteriophage | Absent (Apr 28 2025) |
| PIPEMicroDB (Pigeonpea Microsatellite Database) | https://doi.org/10.1093/database/bas054 | Cajanus cajan | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| piRNA-IPdb | https://doi.org/10.1093/database/bay078 | Eukaryote | piRNA | Absent (Apr 28 2025) |
| piRNAclusterDB | https://doi.org/10.1093/nar/gkab622 | Eukaryote | piRNA | Present (Apr 28 2025) |
| PlaNC-TE (Plant Non-Coding RNA from Transposable Elements) | https://doi.org/10.1093/database/bay078 | Plant | Eukaryotic Transposon | Present (Apr 28 2025) |
| Plant Repeat Database | https://doi.org/10.1093/nar/gkh099 | Plant | Absent (Apr 28 2025) | |
| PlanTEmir DB (Plant Transposable Elements and microRNA Database) | https://doi.org/10.1007/s10142-016-0480-5 | Plant | Eukaryotic Transposon | Present (Apr 28 2025) |
| PlanTEnrichment | https://doi.org/10.1016/j.ygeno.2017.05.008 | Plant | Eukaryotic Transposon | Absent (Apr 28 2025) |
| PlantLTRdb | https://doi.org/10.3389/fpls.2023.1134627 | Plant | LTR Retrotransposon | Present (Apr 28 2025) |
| PlantRep (Plant Repeats) | https://doi.org/10.1007/s00299-021-02817-y | Land Plant, Algae | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| PlantSat | https://doi.org/10.1093/bioinformatics/18.1.28 | Plant | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| Plasmid ATLAS | https://doi.org/10.1093/nar/gky1073 | Archaea, Bacteria | Repeat | Absent (Apr 28 2025) |
| Plasmid Database | https://doi.org/10.1128/MRA.01325-18 | Archaea, Bacteria | Plasmid | Present (Apr 28 2025) |
| PLSDB | https://doi.org/10.1093/nar/gky1050 | Archaea, Bacteria | Plasmid | Absent (Apr 28 2025) |
| PMDbase (Plant Microsatellite Database) | https://doi.org/10.1093/nar/gkw906 | Plant | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| pMLST | https://doi.org/10.12688/wellcomeopenres.14826.1 | Archaea, Bacteria | Plasmid | Absent (Apr 28 2025) |
| proMGE | https://doi.org/10.1093/nar/gkac163 | Archaea, Bacteria | IS Element, Archaeal/Bacterial Transposon, Integron, Prophage/Bacteriophage, ICE/Integrative and Conjugative Element, Mobility Island | Absent (Apr 28 2025) |
| ProphageDB | https://doi.org/10.1007/978-3-540-37256-1_110 | Archaea, Bacteria | Prophage/Bacteriophage | Absent (Apr 28 2025) |
| Pseudofam | https://doi.org/10.1093/nar/gkn758 | Metazoa | Pseudogene | Present (Apr 28 2025) |
| PSID | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) | ||
| PSMD (Pan-Species Microsaetllite Database) | https://doi.org/10.1111/1755-0998.13098 | All | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| PSSRD (Plant Simple Sequence Repeat Database) | https://doi.org/10.1038/s41438-021-00562-7 | Plant | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| PTGBase (Plant Tandem-Duplicated Gene Database) | https://doi.org/10.1093/database/bav017 | Plant | Tandem Duplicated Gene | Absent (Apr 28 2025) |
| pVOG (Prokaryotic Virus Orthologous Groups) | https://doi.org/10.1093/nar/gkw975 | Archaea, Bacteria | Prophage/Bacteriophage, Virus | Absent (Apr 28 2025) |
| Repbase | https://doi.org/10.1186/s13100-015-0041-9 | Eukaryote | Eukaryotic Transposon | Absent (Apr 28 2025) |
| REPEATOME | https://genominfo.org/journal/view.php?number=356 | Homo sapiens, Pan troglodytes | Repeat | Absent (Apr 28 2025) |
| RepetDB | https://doi.org/10.1186/s13100-019-0150-y | Plant, Fungi | Eukaryotic Transposon | Present (Apr 28 2025) |
| RepPop (Repeats of Populus) | https://doi.org/10.1186/1471-2164-10-14 | Populus trichocarpa | Eukaryotic Transposon | Absent (Apr 28 2025) |
| Restriction Enzyme Db | http://doi.org/10.1093/nar/gku1046 | Archaea, Bacteria | Restriction Endonuclease | Absent (Apr 28 2025) |
| Retrobase | Fungi | Eukaryotic Transposon | Present (Apr 28 2025) | |
| RetrogeneDB2 | Animal, Plant | Pseudogene | Absent (Apr 28 2025) | |
| Retroryza | https://doi.org/10.1093/nar/gkl780 | Oryza | LTR Retrotransposon | |
| REXdb (RepeatExplorer Database) | https://doi.org/10.1186/s13100-018-0144-1 | Viridiplantae, Metazoa | protein domains of eukaryotic transposons | Present (Apr 28 2025) |
| RiTE-db (Rice TE Database) | https://doi.org/10.1186/s12864-015-1762-3 | Oryza | Eukaryotic Transposon | Absent (Apr 28 2025) |
| RTFAdb (Retrotransposon and Transcription Factor Database) | https://doi.org/10.1016/j.ygeno.2017.11.002 | Homo sapiens, Mus musculus | Eukaryotic Retrotransposon | Absent (Apr 28 2025) |
| RTRIP (Rice Transposon Insertion Polymorphism) | https://doi.org/10.1111/pbi.13425 | Oryza sativa | Eukaryotic Transposon | Absent (Apr 28 2025) |
| Satellog | https://doi.org/10.1186/1471-2105-6-145 | Homo sapiens | Satellite | Absent (Apr 28 2025) |
| SBCDDB | https://doi.org/10.1093/nar/gkx956 | Homo sapiens, Mus musculus | Sleeping Beauty, ITR/TIR/DNA Transposon | Absent (Apr 28 2025) |
| SIlkSatDb | https://doi.org/10.1093/nar/gki099 | Bombyx mori | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| SINEBase | https://doi.org/10.1093/nar/gks1263 | Eukaryote | SINE | Absent (Apr 28 2025) |
| SisatDatabase | Sesamum | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) | |
| SNPSTR (SNPs and Short Tandem Repeats) | https://doi.org/10.1093/nar/gkl806 | Vertebrate | Simple Sequence Repeat/Microsatellite | Present (Apr 28 2025) |
| SoyTEdb | https://doi.org/10.1186/1471-2164-11-113 | Glycine | Eukaryotic Transposon | Absent (Apr 28 2025) |
| SoyTIPdb | https://doi.org/10.1093/plphys/kiad386 | Glycine | Eukaryotic Transposon | Absent (Apr 28 2025) |
| SPTEDB (Salix and Populus Transposable Elements Database) | https://doi.org/10.1093/database/bay024 | Populus, Salix | Eukaryotic Transposon | Absent (Apr 28 2025) |
| SSRD (Simple Sequence Repeats Database) | http://doi.org/10.1002/cfg.289 | Homo sapiens | Simple Sequence Repeat/Microsatellite | Present (Apr 28 2025) |
| SSRdatabase | Tree | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) | |
| SSRome | https://doi.org/10.1093/nar/gky998 | All | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| STRBase (Short Tandem Repeats Database) | https://doi.org/10.1093/nar/29.1.320 | Mammal | Simple Sequence Repeat/Microsatellite | Present (Apr 28 2025) |
| Sugar Beet Microsatellite Database | https://doi.org/10.1093/database/bav111 | Beta vulgaris | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| Swiss Vitis Microsatellite Database | https://doi.org/10.17660/ActaHortic.2009.827.82 | Vitis | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| TADB (Toxin-Antitoxin Loci Database) | https://doi.org/10.1093/nar/gkad962 | Archaea, Bacteria | Toxin-Antitoxin Loci | Present (Apr 28 2025) |
| TarpiD | https://doi.org/10.1039/d3mo00098b | Eukaryotes | piRNA | Absent (Apr 28 2025) |
| TaSSRDb (Triticum aestivum Simple Sequence Repeats Database) | https://doi.org/10.3389/fpls.2017.02009 | Triticum aestivum | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| TE-TSS | https://doi.org/10.1093/nar/gkad1048 | Mus musculus, Homo sapiens | Eukaryotic Transposon, Eukaryotic Retrotransposon | Absent (Apr 28 2025) |
| TeCD | https://doi.org/10.1186/s12864-023-09135-5 | Eukaryote | eccDNA | |
| TEFam | Mosquito | Eukaryotic Transposon | Absent (Apr 28 2025) | |
| TEMM | https://doi.org/10.1007/978-1-0716-3389-2_4 | Plant | Eukaryotic Transposon | Present (Apr 28 2025) |
| Tick Transposon Database | Ixodida | Eukaryotic Transposon | Absent (Apr 28 2025) | |
| TIDAL-FLY (Transposon Insertion and Depletion Analyzer) | https://doi.org/10.1093/nar/gkv1193 | Drosophila | Absent (Apr 28 2025) | |
| TIGR Maize TE Database | https://doi.org/10.1093/nar/gkj072 | Zea mays | Eukaryotic Transposon | Present (Apr 28 2025) |
| Tn Transposon Registry | https://doi.org/10.1186/s13100-019-0182-3 | Archaea, Bacteria | Archaeal/Bacterial Transposon | Absent (Apr 28 2025) |
| TnCentral | https://doi.org/10.1128/mbio.02060-21 | Archaea, Bacteria | Archaeal/Bacterial Transposon, IS Element | Absent (Apr 28 2025) |
| Tobacco Markers and Primers Database | https://doi.org/10.1186/s12864-018-4878-4 | Nicotiana | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| TranspoGene | https://doi.org/10.1093/nar/gkm949 | Absent (Apr 28 2025) | ||
| TransposonDB | https://doi.org/10.1093/nar/gkac136 | Animal, Plant, Fungi, Protist | Eukaryotic Transposon | Absent (Apr 28 2025) |
| TRbase (Tandem Repeat Database) | https://doi.org/10.1093/bioinformatics/bti059 | Homo sapiens | Tandem Repeat | Present (Apr 28 2025) |
| TRDB (Tandem Repeats Database) | https://doi.org/10.1093/nar/27.2.573 | All | Tandem Repeat | Absent (Apr 28 2025) |
| TRedD (Tandem Repeats over the Edit Distance) | https://doi.org/10.1093/database/baq003 | Homo sapiens | Tandem Repeat | Present (Apr 28 2025) |
| TREP (Transposable Elements Platform) | https://doi.org/10.1016/S1360-1385(02)02372-5 | Animal, Plant, Fungi, Protist | Eukaryotic Transposon | Absent (Apr 28 2025) |
| UgMicroSatdb (Unigene Microsatellite Database) | https://doi.org/10.1093/nar/gkm811 | Simple Sequence Repeat/Microsatellite | Present (Apr 28 2025) | |
| VigSatDB (Vigna Satellite Database) | https://doi.org/10.1093/database/baz055 | Vigna | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) |
| Viral Microsatellite Database | Virus | Simple Sequence Repeat/Microsatellite | Absent (Apr 28 2025) | |
| Yeast Transposons | Saccharomyces | LTR Retrotransposon | Present (Apr 28 2025) |