This page compiles a list of databases for the storage of sequences and metadata associated with repetitive, mobile and selfish DNA.
It is maintained by Tyler A. Elliott. It was initiated with the help of Elizabeth Smikle and Miduna Rahulan, formerly at the Centre for Biodiversity Genomics at the University of Guelph. Suggestions, updates and error corrections are welcome. Please feel free to add missing databases into the table, that would help a lot!
For resources more tailored to Prokaryotes and Viruses, see the linked lists.
| Resource | DOI | Taxonomic Group | Repeat Types | Status |
|---|---|---|---|---|
| 3'UTR-SIRF | https://doi.org/10.1186/1471-2105-8-274 | Mammal | SINE | Absent (Aug 02 2024) |
| ACLAME | https://doi.org/10.1093/nar/gkp938 | Archaea, Bacteria | Plasmid, Virus | Absent (Aug 02 2024) |
| Actinobacteriophage Database (PhagesDB) | https://doi.org/10.1093/bioinformatics/btw711 | Bacteria | Prophage/Bacteriophage | Present (Aug 02 2024) |
| alu_ontology | https://doi.org/10.1016/j.jbi.2016.01.010 | Homo sapiens | Alu, SINE | Present (Aug 02 2024) |
| APTEdb (Atlas of Plant Transposable Elements Database) | https://f1000research.com/articles/10-1194/v1 | Land Plant, Algae | Eukaryotic Transposon | Present (Aug 02 2024) |
| ARDB (Antibiotic Resistance Genes Database) | https://doi.org/10.1093/nar/gkn656 | Archaea, Bacteria | AMR/Antibiotic Resistance | Present (Aug 02 2024) |
| ArTEDB (Arthropod Transposable Elements Database) | https://doi.org/10.3390/genes10050338 | Arthropod | Eukaryotic Transposon | |
| Bamboo Microsatellite Database | https://doi.org/10.1038/srep08018 | Phyllostachys | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) |
| BanSatDB (Banana Satellite Database) | https://doi.org/10.1016/j.cj.2018.01.005 | Musa | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| Bivalvia_TEs | https://doi.org/10.1186/s12915-023-01632-z | Bivalvia | Eukaryotic Transposon | Present (Aug 02 2024) |
| BMTEdb (Bombyx mori Transposable Elements Database) | https://doi.org/10.1093/database/bat055 | Bombyx mori | Eukaryotic Transposon | |
| Boechera Microsatellite Database | https://doi.org/10.1093/database/baw169 | Boechera | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| Brassica TE Db | https://doi.org/10.1186/1756-0500-7-379 | Brassica rapa, Brassica oleracea | Eukaryotic Transposon | |
| BuffSatDB (Buffalo Satellite Database) | https://doi.org/10.1186/1471-2164-14-43 | Bubalis bubalis | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) |
| CAGm (Comparative Analysis of Germline Microsatellites) | https://doi.org/10.1093/nar/gky969 | Homo sapiens | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) |
| CARD (Comprehensive Antibiotic Resistance Database) | https://doi.org/10.1093/nar/gkz935 | Archaea, Bacteria | AMR/Antibiotic Resistance | Present (Aug 02 2024) |
| CarnationDB | https://doi.org/10.1093/dnares/dst053 | Plant, Dianthus | Eukaryotic Repeat | Present (Aug 02 2024) |
| CGATE (Catalogue of Genes Affected by Transposable Elements) | https://doi.org/10.1186/1759-8753-3-9 | Plant, Animal | Eukaryotic Transposon | Present (Aug 02 2024) |
| ChloroMitoSSRDB 2.0 | https://doi.org/10.1093/database/bav084 | Eukaryote | Organelle Microsatellite | Present (Aug 02 2024) |
| CicerSpTEdb (Cicer Species TE Database | https://doi.org/10.1371/journal.pone.0259540 | Plant, Cicer | Eukaryotic Transposon | Present (Aug 02 2024) |
| CicerSpTEdb 2.0 (Cicer Species TE Database | https://doi.org/10.1007/978-1-0716-3389-2_6 | Plant, Cicer | Eukaryotic Transposon | Present (Aug 02 2024) |
| CiArMiSatDB (Cicer arietinum Microsattellite Database) | https://doi.org/10.1186/1471-2105-15-212 | Plant, Cicer | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| CMD (Cotton Microsatellite Database) | https://doi.org/10.1186/1471-2164-7-132 | Gossypium | Simple Sequence Repeat/Microsatellite | |
| CmMDb (Cucumis melo Microsatellite Database) | https://doi.org/10.1371/journal.pone.0118630 | Cucumis melo | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) |
| Colouration mutations in animals | https://doi.org/10.1016/j.tig.2023.04.005 | Animal | Eukaryotic Transposon | |
| ConTEdb (Conifer Transpoable Elements Database) | https://doi.org/10.1093/database/bay131 | Picea | Eukaryotic Transposon | Absent (Aug 02 2024) |
| CyanoSat | https://doi.org/10.1007/s11274-016-2061-0 | Cyanobacteria | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) |
| dbRIP (Database of Retrotransposon Insertion Polymorphisms) | https://doi.org/10.1002/humu.20307 | Homo sapiens | Eukaryotic Retrotransposon | Absent (Aug 02 2024) |
| Dfam | https://doi.org/10.1093/nar/gkv1272 | Eukaryote | Eukaryotic Repeat | Present (Aug 02 2024) |
| Dfam Respository | https://doi.org/10.1093/nar/gkv1272 | Vertebrate | Eukaryotic Repeat | Present (Aug 02 2024) |
| Digs for EVEs Db | https://www.researchgate.net/project/DIGS-for-EVEs | Vertebrate | EVE/Endogenous Viral Element | Absent (Aug 02 2024) |
| DPTEdb (Dioecious Plants Transposable Elements Database) | https://doi.org/10.1093/database/baw078 | Dioecious Plant | Eukaryotic Transposon | Absent (Aug 02 2024) |
| DROPOSON | https://doi.org/10.1093/bioinformatics/13.1.61 | Drosophila | Eukaryotic Transposon | |
| Drosophila TEs Github | Drosophila | Eukaryotic Transposon | Present (Aug 02 2024) | |
| efam | https://doi.org/10.1093/bioinformatics/btab451 | All | Virus | Present (Aug 02 2024) |
| Eggplant Microsatellite Database | https://doi.org/10.3389/fpls.2018.00401 | Solanum melogena | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| EnHERV | https://doi.org/10.1371/journal.pone.0177119 | Homo sapiens | ERV/Endogenous Retrovirus | Absent (Aug 02 2024) |
| EuGI (Eukaryotic Genomic Islands) | https://doi.org/10.1186/s12864-018-4724-8 | Eukaryote | Genomic Island | Present (Aug 02 2024) |
| euL1db (European LINE1Hs Database) | https://doi.org/10.1093/nar/gku1043 | Homo sapiens | LINE1, LINE/non-LTR Retrotransposon | Present (Aug 02 2024) |
| EuMicroSatdb (Eukaryotic Microsatellite Database) | https://doi.org/10.1186/1471-2164-8-225 | Eukaryote | Simple Sequence Repeat/Microsatellite | |
| FabriEVEs | https://doi.org/10.1101/529354 | Animal | EVE/Endogenous Viral Element | Absent (Aug 02 2024) |
| FishMicrosat | https://doi.org/10.1186/1471-2164-14-630 | Fish | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) |
| FishTEDB | https://doi.org/10.1093/database/bax106 | Fish | Eukaryotic Transposon | Present (Aug 02 2024) |
| FlyTE | Drosophila melanogaster | Eukaryotic Transposon | Absent (Aug 02 2024) | |
| Foxtail millet Transposable Elements-based Marker Database | https://doi.org/10.1093/dnares/dsu039 | Setaria italica | Eukaryotic Transposon | |
| Galileo AMR | https://doi.org/10.1093/jac/dkx513 | Bacteria | Prokaryotic MGE | Absent (Aug 02 2024) |
| Gebret (Genome-Wide Browser for Retroelements) | https://doi.org/10.1007/s13258-011-0103-4 | Primate | Eukaryotic Transposon | Absent (Aug 02 2024) |
| gEVE | https://doi.org/10.1093/database/baw087 | Mammal | EVE/Endogenous Viral Element | Present (Aug 02 2024) |
| GinMicrosatDb | https://doi.org/10.1007/s12298-018-0558-8 | Sesamum indicum | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) |
| Globe Artichoke Microsatellite Database | https://doi.org/10.17660/ActaHortic.2016.1147.41 | Cynara cardunculus | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| Group I Intron Database | https://doi.org/10.1093/nar/gkm766 | Bacteria | Group I Mobile Intron | Absent (Aug 02 2024) |
| Gramene Microsatellites | https://doi.org/10.1093/nar/gkq1148 | Oryza | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| GrTEdb (Gossypium raimondii Transposable Elements Database) | https://doi.org/10.1093/database/bax013 | Gossypium raimondii | Eukaryotic Transposon | |
| GtRNAdb (Genomic tRNA Database) | https://doi.org/10.1093/nar/gkv1309 | All | tRNA | Absent (Aug 02 2024) |
| GyDB 2.0 (Gypsy Database) | https://doi.org/10.1093/nar/gkq1061 | Eukaryote | LTR Retrotransposon | Present (Aug 02 2024) |
| HelDB | https://doi.org/10.1111/jse.12929 | Eukaryote | Helitron | Present (Aug 02 2024) |
| HERVd | https://doi.org/10.1093/nar/30.1.205 | Homo sapiens | ERV/Endogenous Retrovirus | Present (Aug 02 2024) |
| HERVd Atlas | https://doi.org/10.1093/nar/gkad904 | Homo sapiens | ERV/Endogenous Retrovirus | Present (Aug 02 2024) |
| HERV Pparser | https://doi.org/10.1080/15384101.2015.1022696 | Homo sapiens | ERV/Endogenous Retrovirus | Present (Aug 02 2024) |
| HESAS (HERVs Expression and Structure Analysis System) | https://doi.org/10.1093/bioinformatics/bti194 | Homo sapiens | ERV/Endogenous Retrovirus | Absent (Aug 02 2024) |
| HeteroGenome | https://doi.org/10.1093/database/bau040 | Model Eukaryote | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) |
| HTT-db (Horizontal Transposon Transfer Database) | https://doi.org/10.1093/database/bax102 | Animal, Plant, Fungi, Protist | Eukaryotic Transposon | Absent (Aug 02 2024) |
| HMEID (Human Mobile Element Insertion Database) | https://doi.org/10.1093/nar/gkac128 | Homo sapiens | Eukaryotic Transposon | Present (Aug 02 2024) |
| ICEberg | https://doi.org/10.1093/nar/gkad935 | Bacteria | ICE/Integrative and Conjugative Element | Present (Aug 02 2024) |
| iMITEDB (Insect MITE Database) | https://doi.org/10.1093/database/baw148 | Insecta | MITE, ITR/TIR/DNA Transposon | |
| ImmeDB | https://doi.org/10.1371/journal.pone.0223680 | Bacteria | Prokaryotic MGE | Present (Aug 02 2024) |
| ImtRDB (Imperfect Mitochondrial Repeats Database) | https://doi.org/10.1186/s12864-019-5536-1 | Metazoa | Mitochondrial Repeat | Absent (Aug 02 2024) |
| InpactorDB | https://doi.org/10.1007/978-1-0716-3389-2_3 | Plant | LTR Retrotransposon | Present (Aug 02 2024) |
| INPHARED | https://doi.org/10.1089/phage.2021.0007 | Bacteria | Prophage/Bacteriophage | Present (Aug 02 2024) |
| intact-LTR-RTs | https://doi.org/10.1038/s41597-021-00968-x | Land Plant | LTR Retrotransposon | Present (Aug 02 2024) |
| InSatDb (Insect Satellite Database) | https://doi.org/10.1093/nar/gkl778 | Insecta | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| Integrall | https://doi.org/10.1093/bioinformatics/btp105 | Bacteria | Integron | Present (Aug 02 2024) |
| Intein Database | https://doi.org/10.1093/nar/30.1.383 | Bacteria | Intein | Present (Aug 02 2024) |
| ISFinder | https://doi.org/10.1093/nar/gkj014 | Archaea, Bacteria | IS Element, Archaeal/Bacterial Transposon | Absent (Aug 02 2024) |
| Islander | https://doi.org/10.1093/nar/gku1072 | Prokaryote | Genomic Island | Present (Aug 02 2024) |
| Kazusa Marker DataBase | https://doi.org/10.1270/jsbbs.64.264 | Land Plant | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| L1Base | https://doi.org/10.1093/nar/gkw925 | Mammal | LINE1, LINE/non-LTR Retrotransposon | Present (Aug 02 2024) |
| LAGLIDADG Enzyme Db | https://doi.org/10.1093/nar/gks365 | Bacteria | Homing Endonuclease | Present (Aug 02 2024) |
| LeishMicrosatDB | https://doi.org/10.1093/database/bau078 | Leishmania | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| LINE fusion genes | https://doi.org/10.1186/1471-2164-7-139 | Homo sapiens | LINE/non-LTR Retrotransposon | Absent (Aug 02 2024) |
| MacroPopGen (Microsatellite Population Genetics Database) | https://doi.org/10.1038/s41597-019-0024-7 | Homo sapiens | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| Maize TE Consortium | Zea mays | Repeat | Present (Aug 02 2024) | |
| Maize TE Database | Zea mays | Eukaryotic Transposon | Present (Aug 02 2024) | |
| MasiveDB | https://doi.org/10.1186/1471-2164-13-158 | Plant | Sirevirus, LTR Retrotransposon | Absent (Aug 02 2024) |
| MDTE DB (MicroRNAs Derived from Transposable Elements Database) | https://doi.org/10.1109/TCBB.2015.2511767 | Mammal | Eukaryotic Transposon | Absent (Aug 02 2024) |
| Microorganisms Tandem Repeats Database | Tandem Repeat | Absent (Aug 02 2024) | ||
| Microsatellites/Tandem Repeats database | Archaea, Bacteria | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) | |
| MICdb (Microsatellites Database) | https://doi.org/10.1093/nar/gkg002 | Bacteria | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| microTranspogene | https://doi.org/10.1093/nar/gkm949 | Absent (Aug 02 2024) | ||
| MitoSatPlant | https://doi.org/10.1016/j.mito.2014.02.002 | Plant | Mitochondrial Microsatellite | |
| MMDB (Magnaporthe Microsatellite Database) | https://doi.org/10.6026/97320630012388 | Magnaporthe oryzae | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) |
| MMDBJ (Mouse Microsatellite Database of Japan) | https://doi.org/10.1538/expanim.53.151 | Mus musculus | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) |
| MMSat | https://doi.org/10.1016/j.gene.2007.11.007 | Eukaryote, Archaea, Bacteria, Virus | Simple Sequence Repeat/Microsatellite, Minisatellite | Present (Aug 02 2024) |
| MnTEdb (Morus notabilis Transposable Elements Database) | https://doi.org/10.1093/database/bav004 | Morus notabilis | Eukaryotic Transposon | Present (Aug 02 2024) |
| mobileOG-db (Mobile Orthologous Groups Database) | https://doi.org/10.1101/2021.08.27.457951 | Archaea, Bacteria | Prophage/Bacteriophage, Archaeal/Bacterial Transposon, IS Element, Plasmid | Absent (Aug 02 2024) |
| Mosquito Transposon Database | Animal, Culicidae | Eukaryotic Transposon | Present (Aug 02 2024) | |
| MRD (Microsatellite Repeats Database) | https://doi.org/10.1186/gb-2002-3-12-preprint0011 | Eukaryote, Archaea, Bacteria | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| MSDB (Microsatellite Database) | https://doi.org/10.1093/gbe/evx132 | All | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| msRepDB | https://doi.org/10.1093/nar/gkab563 | Eukaryote, Archaea, Bacteria | Repeat | Present (Aug 02 2024) |
| MusatransSSRDB (Musa Transcriptome Simple Sequence Repeat Database) | https://doi.org/10.1007/s12038-018-9819-5 | Musa | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| MycoMeth Repeats | https://doi.org/10.1038/s41559-019-0810-9 | Fungi | Eukaryotic Transposon | Present (Aug 02 2024) |
| OGDD (Olive Genetic Diversity Database) | https://doi.org/10.1093/database/bav090 | Olea europaea | Simple Sequence Repeat/Microsatellite | |
| Orthoptera-TElib | https://doi.org/10.1186/s13100-024-00316-x | Orthoptera | Eukaryotic Transposon | Present (Aug 02 2024) |
| Oryza and Gramineae Repeat Database | https://doi.org/10.1093/nar/gkh099 | Oryza | Repeat | Present (Aug 02 2024) |
| P-MITE (Plant MITEs) | https://doi.org/10.1093/nar/gkt1000 | Plant | MITE, ITR/TIR/DNA Transposon | |
| Papaya Repeat Database | https://doi.org/10.1007/978-1-4614-8087-7_13 | Carica papaya | Repeat | |
| Pathogenicity Island Database | https://doi.org/10.1093/nar/gku985 | Archaea, Bacteria | Pathogenicity Island | Present (Aug 02 2024) |
| PGSB Repeat Database/mipsREDdat | https://doi.org/10.1093/nar/gkv1130 | Plant | Repeat | Absent (Aug 02 2024) |
| Phisite | https://doi.org/10.1093/nar/gkp911 | Archaea, Bacteria | Prophage/Bacteriophage | Present (Aug 02 2024) |
| PIPEMicroDB (Pigeonpea Microsatellite Database) | https://doi.org/10.1093/database/bas054 | Cajanus cajan | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) |
| piRNAclusterDB | https://doi.org/10.1093/nar/gkab622 | Eukaryote | piRNA | Present (Aug 02 2024) |
| piRNA-IPdb | https://doi.org/10.1093/database/bay078 | Eukaryote | piRNA | Absent (Aug 02 2024) |
| PlaNC-TE (Plant Non-Coding RNA from Transposable Elements) | https://doi.org/10.1093/database/bay078 | Plant | Eukaryotic Transposon | Present (Aug 02 2024) |
| PlantLTRdb | https://doi.org/10.3389/fpls.2023.1134627 | Plant | LTR Retrotransposon | Present (Aug 02 2024) |
| Plant Repeat Database | https://doi.org/10.1093/nar/gkh099 | Plant | Absent (Aug 02 2024) | |
| PlanTEmir DB (Plant Transposable Elements and microRNA Database) | https://doi.org/10.1007/s10142-016-0480-5 | Plant | Eukaryotic Transposon | Present (Aug 02 2024) |
| PlanTEnrichment | https://doi.org/10.1016/j.ygeno.2017.05.008 | Plant | Eukaryotic Transposon | Present (Aug 02 2024) |
| PlantSat | https://doi.org/10.1093/bioinformatics/18.1.28 | Plant | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| PlantRep (Plant Repeats) | https://doi.org/10.1007/s00299-021-02817-y | Land Plant, Algae | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) |
| Plasmid ATLAS | https://doi.org/10.1093/nar/gky1073 | Archaea, Bacteria | Repeat | Present (Aug 02 2024) |
| Plasmid Database | https://doi.org/10.1128/MRA.01325-18 | Archaea, Bacteria | Plasmid | Present (Aug 02 2024) |
| PLSDB | https://doi.org/10.1093/nar/gky1050 | Archaea, Bacteria | Plasmid | Absent (Aug 02 2024) |
| PMDbase (Plant Microsatellite Database) | https://doi.org/10.1093/nar/gkw906 | Plant | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) |
| pMLST | https://doi.org/10.12688/wellcomeopenres.14826.1 | Archaea, Bacteria | Plasmid | Present (Aug 02 2024) |
| proMGE | https://doi.org/10.1093/nar/gkac163 | Archaea, Bacteria | IS Element, Archaeal/Bacterial Transposon, Integron, Prophage/Bacteriophage, ICE/Integrative and Conjugative Element, Mobility Island | Absent (Aug 02 2024) |
| ProphageDB | https://doi.org/10.1007/978-3-540-37256-1_110 | Archaea, Bacteria | Prophage/Bacteriophage | Absent (Aug 02 2024) |
| Pseudofam | https://doi.org/10.1093/nar/gkn758 | Metazoa | Pseudogene | Present (Aug 02 2024) |
| PSID | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) | ||
| PSMD (Pan-Species Microsaetllite Database) | https://doi.org/10.1111/1755-0998.13098 | All | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| PSSRD (Plant Simple Sequence Repeat Database) | https://doi.org/10.1038/s41438-021-00562-7 | Plant | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| PTGBase (Plant Tandem-Duplicated Gene Database) | https://doi.org/10.1093/database/bav017 | Plant | Tandem Duplicated Gene | Present (Aug 02 2024) |
| pVOG (Prokaryotic Virus Orthologous Groups) | https://doi.org/10.1093/nar/gkw975 | Archaea, Bacteria | Prophage/Bacteriophage, Virus | Absent (Aug 02 2024) |
| Repbase | https://doi.org/10.1186/s13100-015-0041-9 | Eukaryote | Eukaryotic Transposon | Present (Aug 02 2024) |
| REPEATOME | https://genominfo.org/journal/view.php?number=356 | Homo sapiens, Pan troglodytes | Repeat | Absent (Aug 02 2024) |
| RepetDB | https://doi.org/10.1186/s13100-019-0150-y | Plant, Fungi | Eukaryotic Transposon | Present (Aug 02 2024) |
| RepPop (Repeats of Populus) | https://doi.org/10.1186/1471-2164-10-14 | Populus trichocarpa | Eukaryotic Transposon | Absent (Aug 02 2024) |
| Restriction Enzyme Db | http://doi.org/10.1093/nar/gku1046 | Archaea, Bacteria | Restriction Endonuclease | Absent (Aug 02 2024) |
| Retrobase | Fungi | Eukaryotic Transposon | Present (Aug 02 2024) | |
| RetrogeneDB2 | Animal, Plant | Pseudogene | Present (Aug 02 2024) | |
| Retroryza | https://doi.org/10.1093/nar/gkl780 | Oryza | LTR Retrotransposon | |
| REXdb (RepeatExplorer Database) | https://doi.org/10.1186/s13100-018-0144-1 | Viridiplantae (+Metazoa in parallel db) | protein domains of eukaryotic transposons | Present (Aug 02 2024) |
| RiTE-db (Rice TE Database) | https://doi.org/10.1186/s12864-015-1762-3 | Oryza | Eukaryotic Transposon | Absent (Aug 02 2024) |
| RTFAdb (Retrotransposon and Transcription Factor Database) | https://doi.org/10.1016/j.ygeno.2017.11.002 | Homo sapiens, Mus musculus | Eukaryotic Retrotransposon | Present (Aug 02 2024) |
| RTRIP (Rice Transposon Insertion Polymorphism) | https://doi.org/10.1111/pbi.13425 | Oryza sativa | Eukaryotic Transposon | Present (Aug 02 2024) |
| Satellog | https://doi.org/10.1186/1471-2105-6-145 | Homo sapiens | Satellite | Present (Aug 02 2024) |
| SBCDDB | https://doi.org/10.1093/nar/gkx956 | Homo sapiens, Mus musculus | Sleeping Beauty, ITR/TIR/DNA Transposon | Absent (Aug 02 2024) |
| SIlkSatDb | https://doi.org/10.1093/nar/gki099 | Bombyx mori | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| SINEBase | https://doi.org/10.1093/nar/gks1263 | Eukaryote | SINE | Present (Aug 02 2024) |
| SisatDatabase | Sesamum | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) | |
| SNPSTR (SNPs and Short Tandem Repeats) | https://doi.org/10.1093/nar/gkl806 | Vertebrate | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| SoyTEdb | https://doi.org/10.1186/1471-2164-11-113 | Glycine | Eukaryotic Transposon | Present (Aug 02 2024) |
| SoyTIPdb | https://doi.org/10.1093/plphys/kiad386 | Glycine | Eukaryotic Transposon | Present (Aug 02 2024) |
| SPTEDB (Salix and Populus Transposable Elements Database) | https://doi.org/10.1093/database/bay024 | Populus, Salix | Eukaryotic Transposon | Absent (Aug 02 2024) |
| SSRD (Simple Sequence Repeats Database) | http://doi.org/10.1002/cfg.289 | Homo sapiens | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| SSRdatabase | Tree | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) | |
| SSRome | https://doi.org/10.1093/nar/gky998 | All | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| STRBase (Short Tandem Repeats Database) | https://doi.org/10.1093/nar/29.1.320 | Mammal | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| Sugar Beet Microsatellite Database | https://doi.org/10.1093/database/bav111 | Beta vulgaris | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| Swiss Vitis Microsatellite Database | https://doi.org/10.17660/ActaHortic.2009.827.82 | Vitis | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) |
| TADB (Toxin-Antitoxin Loci Database) | https://doi.org/10.1093/nar/gkad962 | Archaea, Bacteria | Toxin-Antitoxin Loci | Present (Aug 02 2024) |
| TarpiD | https://doi.org/10.1039/d3mo00098b | Eukaryotes | piRNA | Absent (Aug 02 2024) |
| TaSSRDb (Triticum aestivum Simple Sequence Repeats Database) | https://doi.org/10.3389/fpls.2017.02009 | Triticum aestivum | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| TeCD | https://doi.org/10.1186/s12864-023-09135-5 | Eukaryote | eccDNA | |
| TEFam | Mosquito | Eukaryotic Transposon | Absent (Aug 02 2024) | |
| TEMM | https://doi.org/10.1007/978-1-0716-3389-2_4 | Plant | Eukaryotic Transposon | Present (Aug 02 2024) |
| Tick Transposon Database | Ixodida | Eukaryotic Transposon | Present (Aug 02 2024) | |
| TIDAL-FLY (Transposon Insertion and Depletion Analyzer) | https://doi.org/10.1093/nar/gkv1193 | Drosophila | Absent (Aug 02 2024) | |
| TIGR Maize TE Database | https://doi.org/10.1093/nar/gkj072 | Zea mays | Eukaryotic Transposon | Present (Aug 02 2024) |
| Tn Transposon Registry | https://doi.org/10.1186/s13100-019-0182-3 | Archaea, Bacteria | Archaeal/Bacterial Transposon | Present (Aug 02 2024) |
| TnCentral | https://doi.org/10.1128/mbio.02060-21 | Archaea, Bacteria | Archaeal/Bacterial Transposon, IS Element | Absent (Aug 02 2024) |
| Tobacco Markers and Primers Database | https://doi.org/10.1186/s12864-018-4878-4 | Nicotiana | Simple Sequence Repeat/Microsatellite | Absent (Aug 02 2024) |
| TranspoGene | https://doi.org/10.1093/nar/gkm949 | Absent (Aug 02 2024) | ||
| TransposonDB | https://doi.org/10.1093/nar/gkac136 | Animal, Plant, Fungi, Protist | Eukaryotic Transposon | Present (Aug 02 2024) |
| TRbase (Tandem Repeat Database) | https://doi.org/10.1093/bioinformatics/bti059 | Homo sapiens | Tandem Repeat | Present (Aug 02 2024) |
| TRedD (Tandem Repeats over the Edit Distance) | https://doi.org/10.1093/database/baq003 | Homo sapiens | Tandem Repeat | Present (Aug 02 2024) |
| TREP (Transposable Elements Platform) | https://doi.org/10.1016/S1360-1385(02)02372-5 | Animal, Plant, Fungi, Protist | Eukaryotic Transposon | Present (Aug 02 2024) |
| TRDB (Tandem Repeats Database) | https://doi.org/10.1093/nar/27.2.573 | All | Tandem Repeat | Absent (Aug 02 2024) |
| UgMicroSatdb (Unigene Microsatellite Database) | https://doi.org/10.1093/nar/gkm811 | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) | |
| VigSatDB (Vigna Satellite Database) | https://doi.org/10.1093/database/baz055 | Vigna | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) |
| Viral Microsatellite Database | Virus | Simple Sequence Repeat/Microsatellite | Present (Aug 02 2024) | |
| Yeast Transposons | Saccharomyces | LTR Retrotransposon | Present (Aug 02 2024) |