This page compiles a list of databases for the storage of sequences and metadata associated with repetitive, mobile and selfish DNA.
It is maintained by Tyler A. Elliott. It was initiated with the help of Elizabeth Smikle and Miduna Rahulan, formerly at the Centre for Biodiversity Genomics at the University of Guelph. Suggestions, updates and error corrections are welcome. Please feel free to add missing databases into the table, that would help a lot!
For resources more tailored to Prokaryotes and Viruses, see the linked lists.
| Resource | DOI | Taxonomic Group | Repeat Types | Status |
|---|---|---|---|---|
| 3'UTR-SIRF | https://doi.org/10.1186/1471-2105-8-274 | Mammal | SINE | Absent (Mar 01 2025) |
| ACLAME | https://doi.org/10.1093/nar/gkp938 | Archaea, Bacteria | Plasmid, Virus | Absent (Mar 01 2025) |
| Actinobacteriophage Database (PhagesDB) | https://doi.org/10.1093/bioinformatics/btw711 | Bacteria | Prophage/Bacteriophage | Absent (Mar 01 2025) |
| alu_ontology | https://doi.org/10.1016/j.jbi.2016.01.010 | Homo sapiens | Alu, SINE | Absent (Mar 01 2025) |
| APTEdb (Atlas of Plant Transposable Elements Database) | https://f1000research.com/articles/10-1194/v1 | Land Plant, Algae | Eukaryotic Transposon | Present (Mar 01 2025) |
| ARDB (Antibiotic Resistance Genes Database) | https://doi.org/10.1093/nar/gkn656 | Archaea, Bacteria | AMR/Antibiotic Resistance | Present (Mar 01 2025) |
| ArTEDB (Arthropod Transposable Elements Database) | https://doi.org/10.3390/genes10050338 | Arthropod | Eukaryotic Transposon | |
| Bamboo Microsatellite Database | https://doi.org/10.1038/srep08018 | Phyllostachys | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| BanSatDB (Banana Satellite Database) | https://doi.org/10.1016/j.cj.2018.01.005 | Musa | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| BeetRepeats | https://doi.org/10.1186/s13104-024-06993-4 | Beta, Patellifolia, Chenopodium, Spinacia | Eukaryotic Repeat | Absent (Mar 01 2025) |
| Bivalvia_TEs | https://doi.org/10.1186/s12915-023-01632-z | Bivalvia | Eukaryotic Transposon | Present (Mar 01 2025) |
| BMTEdb (Bombyx mori Transposable Elements Database) | https://doi.org/10.1093/database/bat055 | Bombyx mori | Eukaryotic Transposon | |
| Boechera Microsatellite Database | https://doi.org/10.1093/database/baw169 | Boechera | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) |
| Brassica TE Db | https://doi.org/10.1186/1756-0500-7-379 | Brassica rapa, Brassica oleracea | Eukaryotic Transposon | |
| BuffSatDB (Buffalo Satellite Database) | https://doi.org/10.1186/1471-2164-14-43 | Bubalis bubalis | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| CAGm (Comparative Analysis of Germline Microsatellites) | https://doi.org/10.1093/nar/gky969 | Homo sapiens | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| CARD (Comprehensive Antibiotic Resistance Database) | https://doi.org/10.1093/nar/gkz935 | Archaea, Bacteria | AMR/Antibiotic Resistance | Present (Mar 01 2025) |
| CarnationDB | https://doi.org/10.1093/dnares/dst053 | Plant, Dianthus | Eukaryotic Repeat | Absent (Mar 01 2025) |
| CGATE (Catalogue of Genes Affected by Transposable Elements) | https://doi.org/10.1186/1759-8753-3-9 | Plant, Animal | Eukaryotic Transposon | Present (Mar 01 2025) |
| ChloroMitoSSRDB 2.0 | https://doi.org/10.1093/database/bav084 | Eukaryote | Organelle Microsatellite | Absent (Mar 01 2025) |
| CiArMiSatDB (Cicer arietinum Microsattellite Database) | https://doi.org/10.1186/1471-2105-15-212 | Plant, Cicer | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) |
| CicerSpTEdb (Cicer Species TE Database | https://doi.org/10.1371/journal.pone.0259540 | Plant, Cicer | Eukaryotic Transposon | Present (Mar 01 2025) |
| CicerSpTEdb 2.0 (Cicer Species TE Database | https://doi.org/10.1007/978-1-0716-3389-2_6 | Plant, Cicer | Eukaryotic Transposon | Present (Mar 01 2025) |
| CMD (Cotton Microsatellite Database) | https://doi.org/10.1186/1471-2164-7-132 | Gossypium | Simple Sequence Repeat/Microsatellite | |
| CmMDb (Cucumis melo Microsatellite Database) | https://doi.org/10.1371/journal.pone.0118630 | Cucumis melo | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| Colouration mutations in animals | https://doi.org/10.1016/j.tig.2023.04.005 | Animal | Eukaryotic Transposon | |
| ConTEdb (Conifer Transpoable Elements Database) | https://doi.org/10.1093/database/bay131 | Picea | Eukaryotic Transposon | Absent (Mar 01 2025) |
| CyanoSat | https://doi.org/10.1007/s11274-016-2061-0 | Cyanobacteria | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| dbRIP (Database of Retrotransposon Insertion Polymorphisms) | https://doi.org/10.1002/humu.20307 | Homo sapiens | Eukaryotic Retrotransposon | Present (Mar 01 2025) |
| Dfam Respository | https://doi.org/10.1093/nar/gkv1272 | Vertebrate | Eukaryotic Repeat | Present (Mar 01 2025) |
| Dfam | https://doi.org/10.1093/nar/gkv1272 | Eukaryote | Eukaryotic Repeat | Present (Mar 01 2025) |
| Digs for EVEs Db | https://www.researchgate.net/project/DIGS-for-EVEs | Vertebrate | EVE/Endogenous Viral Element | Absent (Mar 01 2025) |
| DPTEdb (Dioecious Plants Transposable Elements Database) | https://doi.org/10.1093/database/baw078 | Dioecious Plant | Eukaryotic Transposon | Absent (Mar 01 2025) |
| DROPOSON | https://doi.org/10.1093/bioinformatics/13.1.61 | Drosophila | Eukaryotic Transposon | |
| Drosophila TEs Github | Drosophila | Eukaryotic Transposon | Present (Mar 01 2025) | |
| efam | https://doi.org/10.1093/bioinformatics/btab451 | All | Virus | Absent (Mar 01 2025) |
| Eggplant Microsatellite Database | https://doi.org/10.3389/fpls.2018.00401 | Solanum melogena | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) |
| EnHERV | https://doi.org/10.1371/journal.pone.0177119 | Homo sapiens | ERV/Endogenous Retrovirus | Absent (Mar 01 2025) |
| EuGI (Eukaryotic Genomic Islands) | https://doi.org/10.1186/s12864-018-4724-8 | Eukaryote | Genomic Island | Absent (Mar 01 2025) |
| euL1db (European LINE1Hs Database) | https://doi.org/10.1093/nar/gku1043 | Homo sapiens | LINE1, LINE/non-LTR Retrotransposon | Absent (Mar 01 2025) |
| EuMicroSatdb (Eukaryotic Microsatellite Database) | https://doi.org/10.1186/1471-2164-8-225 | Eukaryote | Simple Sequence Repeat/Microsatellite | |
| FabriEVEs | https://doi.org/10.1101/529354 | Animal | EVE/Endogenous Viral Element | Absent (Mar 01 2025) |
| FishMicrosat | https://doi.org/10.1186/1471-2164-14-630 | Fish | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| FishTEDB | https://doi.org/10.1093/database/bax106 | Fish | Eukaryotic Transposon | Absent (Mar 01 2025) |
| FlyTE | Drosophila melanogaster | Eukaryotic Transposon | Absent (Mar 01 2025) | |
| Foxtail millet Transposable Elements-based Marker Database | https://doi.org/10.1093/dnares/dsu039 | Setaria italica | Eukaryotic Transposon | |
| Galileo AMR | https://doi.org/10.1093/jac/dkx513 | Bacteria | Prokaryotic MGE | Absent (Mar 01 2025) |
| Gebret (Genome-Wide Browser for Retroelements) | https://doi.org/10.1007/s13258-011-0103-4 | Primate | Eukaryotic Transposon | Absent (Mar 01 2025) |
| gEVE | https://doi.org/10.1093/database/baw087 | Mammal | EVE/Endogenous Viral Element | Present (Mar 01 2025) |
| GinMicrosatDb | https://doi.org/10.1007/s12298-018-0558-8 | Sesamum indicum | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| Globe Artichoke Microsatellite Database | https://doi.org/10.17660/ActaHortic.2016.1147.41 | Cynara cardunculus | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) |
| Gramene Microsatellites | https://doi.org/10.1093/nar/gkq1148 | Oryza | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| Group I Intron Database | https://doi.org/10.1093/nar/gkm766 | Bacteria | Group I Mobile Intron | Absent (Mar 01 2025) |
| GrTEdb (Gossypium raimondii Transposable Elements Database) | https://doi.org/10.1093/database/bax013 | Gossypium raimondii | Eukaryotic Transposon | |
| GtRNAdb (Genomic tRNA Database) | https://doi.org/10.1093/nar/gkv1309 | All | tRNA | Absent (Mar 01 2025) |
| GyDB 2.0 (Gypsy Database) | https://doi.org/10.1093/nar/gkq1061 | Eukaryote | LTR Retrotransposon | Absent (Mar 01 2025) |
| HelDB | https://doi.org/10.1111/jse.12929 | Eukaryote | Helitron | Present (Mar 01 2025) |
| HERV Pparser | https://doi.org/10.1080/15384101.2015.1022696 | Homo sapiens | ERV/Endogenous Retrovirus | Absent (Mar 01 2025) |
| HERVd Atlas | https://doi.org/10.1093/nar/gkad904 | Homo sapiens | ERV/Endogenous Retrovirus | Absent (Mar 01 2025) |
| HERVd | https://doi.org/10.1093/nar/30.1.205 | Homo sapiens | ERV/Endogenous Retrovirus | Present (Mar 01 2025) |
| HESAS (HERVs Expression and Structure Analysis System) | https://doi.org/10.1093/bioinformatics/bti194 | Homo sapiens | ERV/Endogenous Retrovirus | Absent (Mar 01 2025) |
| HeteroGenome | https://doi.org/10.1093/database/bau040 | Model Eukaryote | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| HMEID (Human Mobile Element Insertion Database) | https://doi.org/10.1093/nar/gkac128 | Homo sapiens | Eukaryotic Transposon | Present (Mar 01 2025) |
| HTT-db (Horizontal Transposon Transfer Database) | https://doi.org/10.1093/database/bax102 | Animal, Plant, Fungi, Protist | Eukaryotic Transposon | Absent (Mar 01 2025) |
| ICEberg | https://doi.org/10.1093/nar/gkad935 | Bacteria | ICE/Integrative and Conjugative Element | Absent (Mar 01 2025) |
| iMITEDB (Insect MITE Database) | https://doi.org/10.1093/database/baw148 | Insecta | MITE, ITR/TIR/DNA Transposon | |
| ImmeDB | https://doi.org/10.1371/journal.pone.0223680 | Bacteria | Prokaryotic MGE | Present (Mar 01 2025) |
| ImtRDB (Imperfect Mitochondrial Repeats Database) | https://doi.org/10.1186/s12864-019-5536-1 | Metazoa | Mitochondrial Repeat | Absent (Mar 01 2025) |
| InpactorDB | https://doi.org/10.1007/978-1-0716-3389-2_3 | Plant | LTR Retrotransposon | Absent (Mar 01 2025) |
| INPHARED | https://doi.org/10.1089/phage.2021.0007 | Bacteria | Prophage/Bacteriophage | Present (Mar 01 2025) |
| InSatDb (Insect Satellite Database) | https://doi.org/10.1093/nar/gkl778 | Insecta | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| intact-LTR-RTs | https://doi.org/10.1038/s41597-021-00968-x | Land Plant | LTR Retrotransposon | Absent (Mar 01 2025) |
| Integrall | https://doi.org/10.1093/bioinformatics/btp105 | Bacteria | Integron | Absent (Mar 01 2025) |
| Intein Database | https://doi.org/10.1093/nar/30.1.383 | Bacteria | Intein | Present (Mar 01 2025) |
| ISFinder | https://doi.org/10.1093/nar/gkj014 | Archaea, Bacteria | IS Element, Archaeal/Bacterial Transposon | Absent (Mar 01 2025) |
| Islander | https://doi.org/10.1093/nar/gku1072 | Prokaryote | Genomic Island | Present (Mar 01 2025) |
| Kazusa Marker DataBase | https://doi.org/10.1270/jsbbs.64.264 | Land Plant | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| KTED | https://doi.org/10.1093/bioadv/vbae179 | Homo sapiens | Eukaryotic Transposon, Eukaryotic Retrotransposon | Absent (Mar 01 2025) |
| L1Base | https://doi.org/10.1093/nar/gkw925 | Mammal | LINE1, LINE/non-LTR Retrotransposon | Absent (Mar 01 2025) |
| LAGLIDADG Enzyme Db | https://doi.org/10.1093/nar/gks365 | Bacteria | Homing Endonuclease | Absent (Mar 01 2025) |
| LeishMicrosatDB | https://doi.org/10.1093/database/bau078 | Leishmania | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| LINE fusion genes | https://doi.org/10.1186/1471-2164-7-139 | Homo sapiens | LINE/non-LTR Retrotransposon | Absent (Mar 01 2025) |
| MacroPopGen (Microsatellite Population Genetics Database) | https://doi.org/10.1038/s41597-019-0024-7 | Homo sapiens | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) |
| Maize TE Consortium | Zea mays | Repeat | Present (Mar 01 2025) | |
| Maize TE Database | Zea mays | Eukaryotic Transposon | Present (Mar 01 2025) | |
| MasiveDB | https://doi.org/10.1186/1471-2164-13-158 | Plant | Sirevirus, LTR Retrotransposon | Absent (Mar 01 2025) |
| MDTE DB (MicroRNAs Derived from Transposable Elements Database) | https://doi.org/10.1109/TCBB.2015.2511767 | Mammal | Eukaryotic Transposon | Absent (Mar 01 2025) |
| MICdb (Microsatellites Database) | https://doi.org/10.1093/nar/gkg002 | Bacteria | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| Microorganisms Tandem Repeats Database | Tandem Repeat | Absent (Mar 01 2025) | ||
| Microsatellites/Tandem Repeats database | Archaea, Bacteria | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) | |
| microTranspogene | https://doi.org/10.1093/nar/gkm949 | Absent (Mar 01 2025) | ||
| MitoSatPlant | https://doi.org/10.1016/j.mito.2014.02.002 | Plant | Mitochondrial Microsatellite | |
| MMDB (Magnaporthe Microsatellite Database) | https://doi.org/10.6026/97320630012388 | Magnaporthe oryzae | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| MMDBJ (Mouse Microsatellite Database of Japan) | https://doi.org/10.1538/expanim.53.151 | Mus musculus | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| MMSat | https://doi.org/10.1016/j.gene.2007.11.007 | Eukaryote, Archaea, Bacteria, Virus | Simple Sequence Repeat/Microsatellite, Minisatellite | Absent (Mar 01 2025) |
| MnTEdb (Morus notabilis Transposable Elements Database) | https://doi.org/10.1093/database/bav004 | Morus notabilis | Eukaryotic Transposon | Present (Mar 01 2025) |
| mobileOG-db (Mobile Orthologous Groups Database) | https://doi.org/10.1101/2021.08.27.457951 | Archaea, Bacteria | Prophage/Bacteriophage, Archaeal/Bacterial Transposon, IS Element, Plasmid | Absent (Mar 01 2025) |
| Mosquito Transposon Database | Animal, Culicidae | Eukaryotic Transposon | Absent (Mar 01 2025) | |
| MRD (Microsatellite Repeats Database) | https://doi.org/10.1186/gb-2002-3-12-preprint0011 | Eukaryote, Archaea, Bacteria | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) |
| MSDB (Microsatellite Database) | https://doi.org/10.1093/gbe/evx132 | All | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| msRepDB | https://doi.org/10.1093/nar/gkab563 | Eukaryote, Archaea, Bacteria | Repeat | Present (Mar 01 2025) |
| MusatransSSRDB (Musa Transcriptome Simple Sequence Repeat Database) | https://doi.org/10.1007/s12038-018-9819-5 | Musa | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) |
| MycoMeth Repeats | https://doi.org/10.1038/s41559-019-0810-9 | Fungi | Eukaryotic Transposon | Present (Mar 01 2025) |
| OGDD (Olive Genetic Diversity Database) | https://doi.org/10.1093/database/bav090 | Olea europaea | Simple Sequence Repeat/Microsatellite | |
| oriTDB | https://doi.org/10.1093/nar/gkae869 | Bacteria | Plasmid, ICE/Integrative and Conjugative Element | Absent (Mar 01 2025) |
| Orthoptera-TElib | https://doi.org/10.1186/s13100-024-00316-x | Orthoptera | Eukaryotic Transposon | Present (Mar 01 2025) |
| Oryza and Gramineae Repeat Database | https://doi.org/10.1093/nar/gkh099 | Oryza | Repeat | Present (Mar 01 2025) |
| P-MITE (Plant MITEs) | https://doi.org/10.1093/nar/gkt1000 | Plant | MITE, ITR/TIR/DNA Transposon | |
| Papaya Repeat Database | https://doi.org/10.1007/978-1-4614-8087-7_13 | Carica papaya | Repeat | |
| Pathogenicity Island Database | https://doi.org/10.1093/nar/gku985 | Archaea, Bacteria | Pathogenicity Island | Present (Mar 01 2025) |
| PGSB Repeat Database/mipsREDdat | https://doi.org/10.1093/nar/gkv1130 | Plant | Repeat | Absent (Mar 01 2025) |
| Phisite | https://doi.org/10.1093/nar/gkp911 | Archaea, Bacteria | Prophage/Bacteriophage | Absent (Mar 01 2025) |
| PIPEMicroDB (Pigeonpea Microsatellite Database) | https://doi.org/10.1093/database/bas054 | Cajanus cajan | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| piRNA-IPdb | https://doi.org/10.1093/database/bay078 | Eukaryote | piRNA | Absent (Mar 01 2025) |
| piRNAclusterDB | https://doi.org/10.1093/nar/gkab622 | Eukaryote | piRNA | Present (Mar 01 2025) |
| PlaNC-TE (Plant Non-Coding RNA from Transposable Elements) | https://doi.org/10.1093/database/bay078 | Plant | Eukaryotic Transposon | Present (Mar 01 2025) |
| Plant Repeat Database | https://doi.org/10.1093/nar/gkh099 | Plant | Absent (Mar 01 2025) | |
| PlanTEmir DB (Plant Transposable Elements and microRNA Database) | https://doi.org/10.1007/s10142-016-0480-5 | Plant | Eukaryotic Transposon | Present (Mar 01 2025) |
| PlanTEnrichment | https://doi.org/10.1016/j.ygeno.2017.05.008 | Plant | Eukaryotic Transposon | Absent (Mar 01 2025) |
| PlantLTRdb | https://doi.org/10.3389/fpls.2023.1134627 | Plant | LTR Retrotransposon | Present (Mar 01 2025) |
| PlantRep (Plant Repeats) | https://doi.org/10.1007/s00299-021-02817-y | Land Plant, Algae | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| PlantSat | https://doi.org/10.1093/bioinformatics/18.1.28 | Plant | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| Plasmid ATLAS | https://doi.org/10.1093/nar/gky1073 | Archaea, Bacteria | Repeat | Absent (Mar 01 2025) |
| Plasmid Database | https://doi.org/10.1128/MRA.01325-18 | Archaea, Bacteria | Plasmid | Present (Mar 01 2025) |
| PLSDB | https://doi.org/10.1093/nar/gky1050 | Archaea, Bacteria | Plasmid | Absent (Mar 01 2025) |
| PMDbase (Plant Microsatellite Database) | https://doi.org/10.1093/nar/gkw906 | Plant | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) |
| pMLST | https://doi.org/10.12688/wellcomeopenres.14826.1 | Archaea, Bacteria | Plasmid | Absent (Mar 01 2025) |
| proMGE | https://doi.org/10.1093/nar/gkac163 | Archaea, Bacteria | IS Element, Archaeal/Bacterial Transposon, Integron, Prophage/Bacteriophage, ICE/Integrative and Conjugative Element, Mobility Island | Absent (Mar 01 2025) |
| ProphageDB | https://doi.org/10.1007/978-3-540-37256-1_110 | Archaea, Bacteria | Prophage/Bacteriophage | Absent (Mar 01 2025) |
| Pseudofam | https://doi.org/10.1093/nar/gkn758 | Metazoa | Pseudogene | Present (Mar 01 2025) |
| PSID | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) | ||
| PSMD (Pan-Species Microsaetllite Database) | https://doi.org/10.1111/1755-0998.13098 | All | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) |
| PSSRD (Plant Simple Sequence Repeat Database) | https://doi.org/10.1038/s41438-021-00562-7 | Plant | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| PTGBase (Plant Tandem-Duplicated Gene Database) | https://doi.org/10.1093/database/bav017 | Plant | Tandem Duplicated Gene | Absent (Mar 01 2025) |
| pVOG (Prokaryotic Virus Orthologous Groups) | https://doi.org/10.1093/nar/gkw975 | Archaea, Bacteria | Prophage/Bacteriophage, Virus | Absent (Mar 01 2025) |
| Repbase | https://doi.org/10.1186/s13100-015-0041-9 | Eukaryote | Eukaryotic Transposon | Present (Mar 01 2025) |
| REPEATOME | https://genominfo.org/journal/view.php?number=356 | Homo sapiens, Pan troglodytes | Repeat | Absent (Mar 01 2025) |
| RepetDB | https://doi.org/10.1186/s13100-019-0150-y | Plant, Fungi | Eukaryotic Transposon | Present (Mar 01 2025) |
| RepPop (Repeats of Populus) | https://doi.org/10.1186/1471-2164-10-14 | Populus trichocarpa | Eukaryotic Transposon | Absent (Mar 01 2025) |
| Restriction Enzyme Db | http://doi.org/10.1093/nar/gku1046 | Archaea, Bacteria | Restriction Endonuclease | Absent (Mar 01 2025) |
| Retrobase | Fungi | Eukaryotic Transposon | Present (Mar 01 2025) | |
| RetrogeneDB2 | Animal, Plant | Pseudogene | Absent (Mar 01 2025) | |
| Retroryza | https://doi.org/10.1093/nar/gkl780 | Oryza | LTR Retrotransposon | |
| REXdb (RepeatExplorer Database) | https://doi.org/10.1186/s13100-018-0144-1 | Viridiplantae, Metazoa | protein domains of eukaryotic transposons | Present (Mar 01 2025) |
| RiTE-db (Rice TE Database) | https://doi.org/10.1186/s12864-015-1762-3 | Oryza | Eukaryotic Transposon | Absent (Mar 01 2025) |
| RTFAdb (Retrotransposon and Transcription Factor Database) | https://doi.org/10.1016/j.ygeno.2017.11.002 | Homo sapiens, Mus musculus | Eukaryotic Retrotransposon | Absent (Mar 01 2025) |
| RTRIP (Rice Transposon Insertion Polymorphism) | https://doi.org/10.1111/pbi.13425 | Oryza sativa | Eukaryotic Transposon | Absent (Mar 01 2025) |
| Satellog | https://doi.org/10.1186/1471-2105-6-145 | Homo sapiens | Satellite | Absent (Mar 01 2025) |
| SBCDDB | https://doi.org/10.1093/nar/gkx956 | Homo sapiens, Mus musculus | Sleeping Beauty, ITR/TIR/DNA Transposon | Absent (Mar 01 2025) |
| SIlkSatDb | https://doi.org/10.1093/nar/gki099 | Bombyx mori | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| SINEBase | https://doi.org/10.1093/nar/gks1263 | Eukaryote | SINE | Absent (Mar 01 2025) |
| SisatDatabase | Sesamum | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) | |
| SNPSTR (SNPs and Short Tandem Repeats) | https://doi.org/10.1093/nar/gkl806 | Vertebrate | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) |
| SoyTEdb | https://doi.org/10.1186/1471-2164-11-113 | Glycine | Eukaryotic Transposon | Absent (Mar 01 2025) |
| SoyTIPdb | https://doi.org/10.1093/plphys/kiad386 | Glycine | Eukaryotic Transposon | Absent (Mar 01 2025) |
| SPTEDB (Salix and Populus Transposable Elements Database) | https://doi.org/10.1093/database/bay024 | Populus, Salix | Eukaryotic Transposon | Absent (Mar 01 2025) |
| SSRD (Simple Sequence Repeats Database) | http://doi.org/10.1002/cfg.289 | Homo sapiens | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) |
| SSRdatabase | Tree | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) | |
| SSRome | https://doi.org/10.1093/nar/gky998 | All | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| STRBase (Short Tandem Repeats Database) | https://doi.org/10.1093/nar/29.1.320 | Mammal | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) |
| Sugar Beet Microsatellite Database | https://doi.org/10.1093/database/bav111 | Beta vulgaris | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| Swiss Vitis Microsatellite Database | https://doi.org/10.17660/ActaHortic.2009.827.82 | Vitis | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| TADB (Toxin-Antitoxin Loci Database) | https://doi.org/10.1093/nar/gkad962 | Archaea, Bacteria | Toxin-Antitoxin Loci | Present (Mar 01 2025) |
| TarpiD | https://doi.org/10.1039/d3mo00098b | Eukaryotes | piRNA | Absent (Mar 01 2025) |
| TaSSRDb (Triticum aestivum Simple Sequence Repeats Database) | https://doi.org/10.3389/fpls.2017.02009 | Triticum aestivum | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| TE-TSS | https://doi.org/10.1093/nar/gkad1048 | Mus musculus, Homo sapiens | Eukaryotic Transposon, Eukaryotic Retrotransposon | Absent (Mar 01 2025) |
| TeCD | https://doi.org/10.1186/s12864-023-09135-5 | Eukaryote | eccDNA | |
| TEFam | Mosquito | Eukaryotic Transposon | Absent (Mar 01 2025) | |
| TEMM | https://doi.org/10.1007/978-1-0716-3389-2_4 | Plant | Eukaryotic Transposon | Present (Mar 01 2025) |
| Tick Transposon Database | Ixodida | Eukaryotic Transposon | Absent (Mar 01 2025) | |
| TIDAL-FLY (Transposon Insertion and Depletion Analyzer) | https://doi.org/10.1093/nar/gkv1193 | Drosophila | Absent (Mar 01 2025) | |
| TIGR Maize TE Database | https://doi.org/10.1093/nar/gkj072 | Zea mays | Eukaryotic Transposon | Present (Mar 01 2025) |
| Tn Transposon Registry | https://doi.org/10.1186/s13100-019-0182-3 | Archaea, Bacteria | Archaeal/Bacterial Transposon | Absent (Mar 01 2025) |
| TnCentral | https://doi.org/10.1128/mbio.02060-21 | Archaea, Bacteria | Archaeal/Bacterial Transposon, IS Element | Absent (Mar 01 2025) |
| Tobacco Markers and Primers Database | https://doi.org/10.1186/s12864-018-4878-4 | Nicotiana | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| TranspoGene | https://doi.org/10.1093/nar/gkm949 | Absent (Mar 01 2025) | ||
| TransposonDB | https://doi.org/10.1093/nar/gkac136 | Animal, Plant, Fungi, Protist | Eukaryotic Transposon | Absent (Mar 01 2025) |
| TRbase (Tandem Repeat Database) | https://doi.org/10.1093/bioinformatics/bti059 | Homo sapiens | Tandem Repeat | Present (Mar 01 2025) |
| TRDB (Tandem Repeats Database) | https://doi.org/10.1093/nar/27.2.573 | All | Tandem Repeat | Absent (Mar 01 2025) |
| TRedD (Tandem Repeats over the Edit Distance) | https://doi.org/10.1093/database/baq003 | Homo sapiens | Tandem Repeat | Absent (Mar 01 2025) |
| TREP (Transposable Elements Platform) | https://doi.org/10.1016/S1360-1385(02)02372-5 | Animal, Plant, Fungi, Protist | Eukaryotic Transposon | Absent (Mar 01 2025) |
| UgMicroSatdb (Unigene Microsatellite Database) | https://doi.org/10.1093/nar/gkm811 | Simple Sequence Repeat/Microsatellite | Present (Mar 01 2025) | |
| VigSatDB (Vigna Satellite Database) | https://doi.org/10.1093/database/baz055 | Vigna | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) |
| Viral Microsatellite Database | Virus | Simple Sequence Repeat/Microsatellite | Absent (Mar 01 2025) | |
| Yeast Transposons | Saccharomyces | LTR Retrotransposon | Present (Mar 01 2025) |